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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107956782   DNA-directed RNA polymerases II, IV and V subunit 3 
 ghi-r.1   107955957   U6 snRNA phosphodiesterase 
 ghi-r.1   107938020   U6 snRNA phosphodiesterase 
 ghi-r.1   107913548   U6 snRNA phosphodiesterase 
 ath-u.5   AT5G51170   U6 snRNA phosphodiesterase-like protein 
 bra-r.6   103864859   U6 snRNA phosphodiesterase 
 bna-r.1   106375662   U6 snRNA phosphodiesterase 1 
 bna-r.1   125578934   U6 snRNA phosphodiesterase 1-like 
 cit-r.1   102628755   uncharacterized LOC102628755 
 gma-u.5   100804441   U6 snRNA phosphodiesterase 
 vvi-u.5   100245880   uncharacterized LOC100245880 
 ppo-u.5   7457594   uncharacterized LOC7457594 
 mtr-u.5   25480021   U6 snRNA phosphodiesterase 
 mtr-u.5   25480238   U6 snRNA phosphodiesterase 
 sly-u.5   101244935   uncharacterized LOC101244935 
 sot-r.1   102601305   U6 snRNA phosphodiesterase 
 nta-r.1   107785295   uncharacterized LOC107785295 
 nta-r.1   107770997   uncharacterized LOC107770997 
 osa-u.5   4330165   U6 snRNA phosphodiesterase 
 zma-u.5   100275088   uncharacterized LOC100275088 
 tae-r.2   123137765   U6 snRNA phosphodiesterase 
 tae-r.2   123141590   U6 snRNA phosphodiesterase 
 tae-r.2   123130732   U6 snRNA phosphodiesterase 
 hvu-r.1   123403769   U6 snRNA phosphodiesterase 
 sbi-r.1   8076252   U6 snRNA phosphodiesterase 
 bdi-r.1   100839402   U6 snRNA phosphodiesterase 
 cre-r.1   CHLRE_01g041900v5   uncharacterized protein 

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Top 50 coexpressed genes to 107956782 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107956782 (ghi-r.1 coexpression data)

CoexMap"107956782"


ghiLOC107956782 | Entrez gene ID : 107956782    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 1 1 2 1 1 1 1 2 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03020 [list] [network] RNA polymerase (126 genes)
ghi03420 [list] [network] Nucleotide excision repair (188 genes)
GO BP
GO:0034477 [list] [network] U6 snRNA 3'-end processing  (5 genes)  IEA  
GO:0006351 [list] [network] DNA-templated transcription  (617 genes)  IEA  
GO CC
GO:0005665 [list] [network] RNA polymerase II, core complex  (68 genes)  IEA  
GO MF
GO:0004518 [list] [network] nuclease activity  (749 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (1206 genes)  IEA  
Protein XP_040952803.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  chlo_mito 5  (predict for XP_040952803.1)
Subcellular
localization
TargetP
mito 6  (predict for XP_040952803.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107956782
ghi-r.1
for
107955957
ghi-r.1
for
107938020
ghi-r.1
for
107913548
ath-u.5
for
AT5G51170
bra-r.6
for
103864859
bna-r.1
for
106375662
bna-r.1
for
125578934
cit-r.1
for
102628755
gma-u.5
for
100804441
vvi-u.5
for
100245880
ppo-u.5
for
7457594
mtr-u.5
for
25480021
mtr-u.5
for
25480238
sly-u.5
for
101244935
sot-r.1
for
102601305
nta-r.1
for
107785295
nta-r.1
for
107770997
osa-u.5
for
4330165
zma-u.5
for
100275088
tae-r.2
for
123137765
tae-r.2
for
123141590
tae-r.2
for
123130732
hvu-r.1
for
123403769
sbi-r.1
for
8076252
bdi-r.1
for
100839402
cre-r.1
for
CHLRE_01g041900v5


Ortholog ID: 8650
Species ghi ghi ghi ath bra bna bna cit gma vvi ppo mtr mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC107956782 LOC107913548 LOC107892913 AT5G51170 LOC103864859 LOC106375662 LOC125578934 LOC102628755 LOC100804441 LOC100245880 LOC7457594 LOC25480021 LOC25480238 LOC101244935 LOC102601305 LOC107785295 LOC107770997 LOC4330165 LOC100275088 LOC123137765 LOC123141590 LOC123130732 LOC123403769 LOC8076252 LOC100839402 CHLRE_01g041900v5
Function* DNA-directed RNA polymerases II, IV and V subunit 3 U6 snRNA phosphodiesterase DNA-directed RNA polymerases II, IV and V subunit 3-like U6 snRNA phosphodiesterase-like protein U6 snRNA phosphodiesterase U6 snRNA phosphodiesterase 1 U6 snRNA phosphodiesterase 1-like uncharacterized LOC102628755 U6 snRNA phosphodiesterase uncharacterized LOC100245880 uncharacterized LOC7457594 U6 snRNA phosphodiesterase U6 snRNA phosphodiesterase uncharacterized LOC101244935 U6 snRNA phosphodiesterase uncharacterized LOC107785295 uncharacterized LOC107770997 U6 snRNA phosphodiesterase uncharacterized LOC100275088 U6 snRNA phosphodiesterase U6 snRNA phosphodiesterase U6 snRNA phosphodiesterase U6 snRNA phosphodiesterase U6 snRNA phosphodiesterase U6 snRNA phosphodiesterase uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 6
ghi03420 Nucleotide excision repair 6
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 6
ghi03420 Nucleotide excision repair 6
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 4
bna04120 Ubiquitin mediated proteolysis 3
bna00270 Cysteine and methionine metabolism 2
bna04146 Peroxisome 2
bna00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 3
bna00270 Cysteine and methionine metabolism 2
bna04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04130 SNARE interactions in vesicular transport 2
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03420 Nucleotide excision repair 2
vvi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00360 Phenylalanine metabolism 2
mtr00650 Butanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00520 Amino sugar and nucleotide sugar metabolism 3
mtr00280 Valine, leucine and isoleucine degradation 2
mtr00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
mtr00350 Tyrosine metabolism 2
mtr00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03083 Polycomb repressive complex 3
nta04120 Ubiquitin mediated proteolysis 3
nta04141 Protein processing in endoplasmic reticulum 3
nta03010 Ribosome 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 2
nta03013 Nucleocytoplasmic transport 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00260 Glycine, serine and threonine metabolism 3
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
tae01230 Biosynthesis of amino acids 2
tae00630 Glyoxylate and dicarboxylate metabolism 2
tae00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 5
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04820 Cytoskeleton in muscle cells 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04144 Endocytosis 3
cre03250 Viral life cycle - HIV-1 2
cre03272 Virion - Hepatitis viruses 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107956782 107913548 107892913 835191 103864859 106375662 125578934 102628755 100804441 100245880 7457594 25480021 25480238 101244935 102601305 107785295 107770997 4330165 100275088 123137765 123141590 123130732 123403769 8076252 100839402 5715582
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