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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107957495   threonylcarbamoyladenosine tRNA methylthiotransferase 
 ghi-r.1   107904897   threonylcarbamoyladenosine tRNA methylthiotransferase 
 ath-u.5   AT1G72090   Methylthiotransferase 
 bra-r.6   103831720   threonylcarbamoyladenosine tRNA methylthiotransferase 
 bna-r.1   106354193   threonylcarbamoyladenosine tRNA methylthiotransferase 
 bna-r.1   106376824   threonylcarbamoyladenosine tRNA methylthiotransferase-like 
 cit-r.1   102617557   uncharacterized LOC102617557 
 gma-u.5   100798865   threonylcarbamoyladenosine tRNA methylthiotransferase 
 vvi-u.5   100258899   uncharacterized LOC100258899 
 ppo-u.5   18104409   uncharacterized LOC18104409 
 mtr-u.5   25491785   threonylcarbamoyladenosine tRNA methylthiotransferase 
 sly-u.5   101256832   uncharacterized LOC101256832 
 sot-r.1   102597096   threonylcarbamoyladenosine tRNA methylthiotransferase 
 nta-r.1   107764109   uncharacterized LOC107764109 
 nta-r.1   107815701   uncharacterized LOC107815701 
 osa-u.5   4335891   uncharacterized LOC4335891 
 zma-u.5   100191823   uncharacterized LOC100191823 
 tae-r.2   123053344   threonylcarbamoyladenosine tRNA methylthiotransferase 
 tae-r.2   123045496   threonylcarbamoyladenosine tRNA methylthiotransferase 
 tae-r.2   123189245   threonylcarbamoyladenosine tRNA methylthiotransferase 
 hvu-r.1   123426761   threonylcarbamoyladenosine tRNA methylthiotransferase 
 sbi-r.1   8075529   threonylcarbamoyladenosine tRNA methylthiotransferase 
 bdi-r.1   100841365   threonylcarbamoyladenosine tRNA methylthiotransferase 
 cre-r.1   CHLRE_03g149300v5   uncharacterized protein 

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Top 50 coexpressed genes to 107957495 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107957495 (ghi-r.1 coexpression data)

CoexMap"107957495"


ghiLOC107957495 | Entrez gene ID : 107957495    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 2 1 1 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0035600 [list] [network] tRNA methylthiolation  (2 genes)  IEA  
GO CC
GO:0005783 [list] [network] endoplasmic reticulum  (1428 genes)  IEA  
GO MF
GO:0035598 [list] [network] tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase activity  (2 genes)  IEA  
GO:0051539 [list] [network] 4 iron, 4 sulfur cluster binding  (90 genes)  IEA  
Protein XP_016748500.2 [sequence] [blastp]
XP_016748501.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 3  (predict for XP_016748500.2)
cyto 6,  nucl 3  (predict for XP_016748501.2)
Subcellular
localization
TargetP
other 8  (predict for XP_016748500.2)
other 8  (predict for XP_016748501.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107957495
ghi-r.1
for
107904897
ath-u.5
for
AT1G72090
bra-r.6
for
103831720
bna-r.1
for
106354193
bna-r.1
for
106376824
cit-r.1
for
102617557
gma-u.5
for
100798865
vvi-u.5
for
100258899
ppo-u.5
for
18104409
mtr-u.5
for
25491785
sly-u.5
for
101256832
sot-r.1
for
102597096
nta-r.1
for
107764109
nta-r.1
for
107815701
osa-u.5
for
4335891
zma-u.5
for
100191823
tae-r.2
for
123053344
tae-r.2
for
123045496
tae-r.2
for
123189245
hvu-r.1
for
123426761
sbi-r.1
for
8075529
bdi-r.1
for
100841365
cre-r.1
for
CHLRE_03g149300v5


Ortholog ID: 11124
Species ghi ghi ath bra bna bna cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC107957495 LOC107904897 AT1G72090 LOC103831720 LOC106354193 LOC106376824 LOC102617557 LOC100798865 LOC100258899 LOC18104409 LOC25491785 LOC101256832 LOC102597096 LOC107764109 LOC107815701 LOC4335891 LOC100191823 LOC123053344 LOC123045496 LOC123189245 LOC123426761 LOC8075529 LOC100841365 CHLRE_03g149300v5
Function* threonylcarbamoyladenosine tRNA methylthiotransferase threonylcarbamoyladenosine tRNA methylthiotransferase Methylthiotransferase threonylcarbamoyladenosine tRNA methylthiotransferase threonylcarbamoyladenosine tRNA methylthiotransferase threonylcarbamoyladenosine tRNA methylthiotransferase-like uncharacterized LOC102617557 threonylcarbamoyladenosine tRNA methylthiotransferase uncharacterized LOC100258899 uncharacterized LOC18104409 threonylcarbamoyladenosine tRNA methylthiotransferase uncharacterized LOC101256832 threonylcarbamoyladenosine tRNA methylthiotransferase uncharacterized LOC107764109 uncharacterized LOC107815701 uncharacterized LOC4335891 uncharacterized LOC100191823 threonylcarbamoyladenosine tRNA methylthiotransferase threonylcarbamoyladenosine tRNA methylthiotransferase threonylcarbamoyladenosine tRNA methylthiotransferase threonylcarbamoyladenosine tRNA methylthiotransferase threonylcarbamoyladenosine tRNA methylthiotransferase threonylcarbamoyladenosine tRNA methylthiotransferase uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 5
gma00970 Aminoacyl-tRNA biosynthesis 2
gma03082 ATP-dependent chromatin remodeling 2
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 8
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
sly03015 mRNA surveillance pathway 2
sly00970 Aminoacyl-tRNA biosynthesis 2
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 5
sot00290 Valine, leucine and isoleucine biosynthesis 4
sot00770 Pantothenate and CoA biosynthesis 4
sot01210 2-Oxocarboxylic acid metabolism 4
sot00650 Butanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 6
nta03008 Ribosome biogenesis in eukaryotes 4
nta03040 Spliceosome 3
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
nta00650 Butanoate metabolism 2
nta03040 Spliceosome 2
nta04120 Ubiquitin mediated proteolysis 2
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
tae03010 Ribosome 3
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 8
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 3
hvu03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107957495 107904897 843540 103831720 106354193 106376824 102617557 100798865 100258899 18104409 25491785 101256832 102597096 107764109 107815701 4335891 100191823 123053344 123045496 123189245 123426761 8075529 100841365 5721171
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