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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_03g149300v5   uncharacterized protein 
 ath-u.5   AT1G72090   Methylthiotransferase 
 gma-u.5   100798865   threonylcarbamoyladenosine tRNA methylthiotransferase 
 sly-u.5   101256832   uncharacterized LOC101256832 
 osa-u.5   4335891   uncharacterized LOC4335891 
 zma-u.5   100191823   uncharacterized LOC100191823 
 vvi-u.5   100258899   uncharacterized LOC100258899 
 ppo-u.5   18104409   uncharacterized LOC18104409 
 mtr-u.5   25491785   threonylcarbamoyladenosine tRNA methylthiotransferase 

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Top 50 coexpressed genes to CHLRE_03g149300v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_03g149300v5 (cre-r.1 coexpression data)

CoexMap"5721171"


creCHLRE_03g149300v5 | Entrez gene ID : 5721171      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0035600 [list] [network] tRNA methylthiolation  (2 genes)  IEA  
GO CC
GO:0005783 [list] [network] endoplasmic reticulum  (454 genes)  IEA  
GO MF
GO:0035598 [list] [network] tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase activity  (1 genes)  IEA  
GO:0051539 [list] [network] 4 iron, 4 sulfur cluster binding  (26 genes)  IEA  
Protein XP_001695682.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  E.R. 4,  cyto 1,  mito 1,  plas 1,  mito_plas 1,  cyto_plas 1  (predict for XP_001695682.2)
Subcellular
localization
TargetP
other 8  (predict for XP_001695682.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_03g149300v5

.
ath-u.5
for
AT1G72090

.
gma-u.5
for
100798865

.
sly-u.5
for
101256832

.
osa-u.5
for
4335891

.
zma-u.5
for
100191823

.
vvi-u.5
for
100258899

.
ppo-u.5
for
18104409

.
mtr-u.5
for
25491785

.


Ortholog ID: 11124
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT1G72090 LOC100798865 LOC101256832 LOC4335891 LOC100191823 LOC103831720 LOC100258899 LOC18104409 LOC25491785 LOC123053344 LOC123045496 LOC123426761 LOC107904897 LOC107957495 LOC106354193 LOC106376824 CHLRE_03g149300v5 LOC8075529 LOC102597096 LOC102617557 LOC100841365 LOC107815701 LOC107764109
Function* Methylthiotransferase threonylcarbamoyladenosine tRNA methylthiotransferase uncharacterized LOC101256832 uncharacterized LOC4335891 uncharacterized LOC100191823 threonylcarbamoyladenosine tRNA methylthiotransferase uncharacterized LOC100258899 uncharacterized LOC18104409 threonylcarbamoyladenosine tRNA methylthiotransferase threonylcarbamoyladenosine tRNA methylthiotransferase threonylcarbamoyladenosine tRNA methylthiotransferase threonylcarbamoyladenosine tRNA methylthiotransferase threonylcarbamoyladenosine tRNA methylthiotransferase threonylcarbamoyladenosine tRNA methylthiotransferase threonylcarbamoyladenosine tRNA methylthiotransferase threonylcarbamoyladenosine tRNA methylthiotransferase-like uncharacterized protein threonylcarbamoyladenosine tRNA methylthiotransferase threonylcarbamoyladenosine tRNA methylthiotransferase uncharacterized LOC102617557 threonylcarbamoyladenosine tRNA methylthiotransferase uncharacterized LOC107815701 uncharacterized LOC107764109
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 5
gma00970 Aminoacyl-tRNA biosynthesis 2
gma03082 ATP-dependent chromatin remodeling 2
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
sly03015 mRNA surveillance pathway 2
sly00970 Aminoacyl-tRNA biosynthesis 2
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 8
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
tae03010 Ribosome 3
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 3
hvu03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 5
sot00290 Valine, leucine and isoleucine biosynthesis 4
sot00770 Pantothenate and CoA biosynthesis 4
sot01210 2-Oxocarboxylic acid metabolism 4
sot00650 Butanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
nta00650 Butanoate metabolism 2
nta03040 Spliceosome 2
nta04120 Ubiquitin mediated proteolysis 2
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 6
nta03008 Ribosome biogenesis in eukaryotes 4
nta03040 Spliceosome 3
nta04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843540 100798865 101256832 4335891 100191823 103831720 100258899 18104409 25491785 123053344 123045496 123426761 107904897 107957495 106354193 106376824 5721171 8075529 102597096 102617557 100841365 107815701 107764109
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