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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107958577   RING-H2 finger protein ATL46 
 ath-u.5   AT5G40250   RING/U-box superfamily protein 
 ath-u.5   AT1G23980   RING/U-box superfamily protein 
 gma-u.5   100794750   RING-H2 finger protein ATL47 
 gma-u.5   100805154   RING-H2 finger protein ATL47 
 gma-u.5   RFP1   RING-type E3 ubiquitin ligase 
 vvi-u.5   100253470   RING-H2 finger protein ATL46 
 vvi-u.5   104882287   RING-H2 finger protein ATL46 
 ppo-u.5   7483485   RING-H2 finger protein ATL46 
 ppo-u.5   7496654   RING-H2 finger protein ATL46 
 ppo-u.5   7457720   RING-H2 finger protein ATL46 
 mtr-u.5   25495206   RING-H2 finger protein ATL46 
 mtr-u.5   25501278   RING-H2 finger protein ATL47 
 mtr-u.5   11409570   RING-H2 finger protein ATL47 
 sly-u.5   101256874   RING-H2 finger protein ATL47 
 sly-u.5   101260009   RING-H2 finger protein ATL46 
 sly-u.5   101247279   RING-H2 finger protein ATL46 
 osa-u.5   4340585   RING-H2 finger protein ATL46 
 osa-u.5   4340250   RING-H2 finger protein ATL46 
 osa-u.5   4330698   RING-H2 finger protein ATL46 
 zma-u.5   103627714   RING-H2 finger protein ATL46 
 zma-u.5   100304207   putative RING zinc finger domain superfamily protein 
 zma-u.5   100279788   uncharacterized LOC100279788 

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Top 50 coexpressed genes to 107958577 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107958577 (ghi-r.1 coexpression data)

CoexMap"107958577"


ghiLOC107958577 | Entrez gene ID : 107958577    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 2 3 2 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0031625 [list] [network] ubiquitin protein ligase binding  (108 genes)  IEA  
Protein XP_016749877.1 [sequence] [blastp]
Subcellular
localization
wolf
extr 5,  cyto 1,  vacu 1,  chlo 1,  mito 1,  E.R. 1,  cyto_nucl 1,  chlo_mito 1,  cyto_pero 1,  cyto_plas 1  (predict for XP_016749877.1)
Subcellular
localization
TargetP
other 6  (predict for XP_016749877.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107958577
ath-u.5
for
AT5G40250
ath-u.5
for
AT1G23980
gma-u.5
for
100794750
gma-u.5
for
100805154
gma-u.5
for
RFP1
vvi-u.5
for
100253470
vvi-u.5
for
104882287
ppo-u.5
for
7483485
ppo-u.5
for
7496654
ppo-u.5
for
7457720
mtr-u.5
for
25495206
mtr-u.5
for
25501278
mtr-u.5
for
11409570
sly-u.5
for
101256874
sly-u.5
for
101260009
sly-u.5
for
101247279
osa-u.5
for
4340585
osa-u.5
for
4340250
osa-u.5
for
4330698
zma-u.5
for
103627714
zma-u.5
for
100304207
zma-u.5
for
100279788


Ortholog ID: 1677
Species ghi ghi ath ath bra bra bna bna cit cit gma gma vvi vvi ppo mtr mtr sly sly sot sot nta nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi
Symbol LOC107909654 LOC107958577 AT1G23980 AT5G40250 LOC103863965 LOC103850167 LOC106352683 LOC106446138 LOC102628155 LOC102630819 LOC100787206 LOC100805154 LOC100253470 LOC104882287 LOC7483485 LOC25501278 LOC11409570 LOC101251870 LOC101247279 LOC102585645 LOC102587520 LOC107798316 LOC107795505 LOC4340250 LOC4340585 LOC100192054 LOC100304207 LOC123149852 LOC123169642 LOC123409026 LOC123408790 LOC110431343 LOC8075720 LOC100830087 LOC100842401
Function* RING-H2 finger protein ATL47 RING-H2 finger protein ATL46 RING/U-box superfamily protein RING/U-box superfamily protein RING-H2 finger protein ATL46 RING-H2 finger protein ATL46 RING-H2 finger protein ATL46-like RING-H2 finger protein ATL46 RING-H2 finger protein ATL47 RING-H2 finger protein ATL46 RING-H2 finger protein ATL46 RING-H2 finger protein ATL47 RING-H2 finger protein ATL46 RING-H2 finger protein ATL46 RING-H2 finger protein ATL46 RING-H2 finger protein ATL47 RING-H2 finger protein ATL47 RING-H2 finger protein ATL46-like RING-H2 finger protein ATL46 RING-H2 finger protein ATL46-like RING-H2 finger protein ATL46-like RING-H2 finger protein ATL46-like RING-H2 finger protein ATL46-like RING-H2 finger protein ATL46 RING-H2 finger protein ATL46 putative RING zinc finger domain superfamily protein putative RING zinc finger domain superfamily protein RING-H2 finger protein ATL46 RING-H2 finger protein ATL47 RING-H2 finger protein ATL46-like RING-H2 finger protein ATL47-like RING-H2 finger protein ATL46-like RING-H2 finger protein ATL46 RING-H2 finger protein ATL46 RING-H2 finger protein ATL46
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00061 Fatty acid biosynthesis 3
gma00620 Pyruvate metabolism 3
gma01200 Carbon metabolism 3
gma01212 Fatty acid metabolism 3
gma00780 Biotin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00940 Phenylpropanoid biosynthesis 4
sly00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04016 MAPK signaling pathway - plant 3
osa04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04814 Motor proteins 6
zma04145 Phagosome 5
zma04517 IgSF CAM signaling 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04016 MAPK signaling pathway - plant 3
sbi04070 Phosphatidylinositol signaling system 3
sbi04075 Plant hormone signal transduction 3
sbi04626 Plant-pathogen interaction 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107909654 107958577 839010 834023 103863965 103850167 106352683 106446138 102628155 102630819 100787206 100805154 100253470 104882287 7483485 25501278 11409570 101251870 101247279 102585645 102587520 107798316 107795505 4340250 4340585 100192054 100304207 123149852 123169642 123409026 123408790 110431343 8075720 100830087 100842401
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