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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107959576   pentatricopeptide repeat-containing protein At2g26790, mitochondrial 
 ghi-r.1   107944899   uncharacterized LOC107944899 
 ghi-r.1   107959433   pentatricopeptide repeat-containing protein At2g26790, mitochondrial-like 
 ath-u.5   AT2G26790   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-u.5   FAC19   Tetratricopeptide repeat (TPR)-like superfamily protein 
 bra-r.6   103872080   putative pentatricopeptide repeat-containing protein At1g13800 
 bra-r.6   103829634   pentatricopeptide repeat-containing protein At2g26790, mitochondrial 
 bna-r.1   106358457   pentatricopeptide repeat-containing protein At2g26790, mitochondrial 
 cit-r.1   102617622   pentatricopeptide repeat-containing protein At2g26790, mitochondrial-like 
 cit-r.1   102617497   pentatricopeptide repeat-containing protein At2g26790, mitochondrial-like 
 gma-u.5   100775312   pentatricopeptide repeat-containing protein At2g26790, mitochondrial 
 vvi-u.5   100243250   pentatricopeptide repeat-containing protein At2g26790, mitochondrial 
 ppo-u.5   7494379   pentatricopeptide repeat-containing protein At2g26790, mitochondrial 
 mtr-u.5   25489783   pentatricopeptide repeat-containing protein At2g26790, mitochondrial 
 mtr-u.5   11420328   pentatricopeptide repeat-containing protein At2g26790, mitochondrial 
 sly-u.5   101266822   pentatricopeptide repeat-containing protein At2g26790, mitochondrial 
 sot-r.1   102582865   pentatricopeptide repeat-containing protein At2g26790, mitochondrial 
 nta-r.1   107780386   uncharacterized LOC107780386 

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Top 50 coexpressed genes to 107959576 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107959576 (ghi-r.1 coexpression data)

CoexMap"107959576"


ghiLOC107959576 | Entrez gene ID : 107959576    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta bdi osa tae zma cre sbi hvu
Paralog 3 2 2 1 2 1 1 1 2 1 1 1 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016751147.1 [sequence] [blastp]
XP_016751148.1 [sequence] [blastp]
XP_016751149.1 [sequence] [blastp]
XP_016751150.1 [sequence] [blastp]
XP_040970353.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 3,  chlo_mito 3,  cyto 3,  chlo 2,  nucl 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_016751147.1)
chlo 4,  chlo_mito 4,  mito 3,  nucl 1  (predict for XP_016751148.1)
chlo 4,  chlo_mito 4,  mito 3,  nucl 1  (predict for XP_016751149.1)
chlo_mito 3,  cyto 3,  mito 3,  chlo 2,  cyto_mito 1  (predict for XP_016751150.1)
mito 4,  chlo_mito 3,  chlo 2,  cyto_mito 2,  cyto 2  (predict for XP_040970353.1)
Subcellular
localization
TargetP
mito 7  (predict for XP_016751147.1)
mito 7  (predict for XP_016751148.1)
mito 7  (predict for XP_016751149.1)
mito 7  (predict for XP_016751150.1)
mito 7  (predict for XP_040970353.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107959576
ghi-r.1
for
107944899
ghi-r.1
for
107959433
ath-u.5
for
AT2G26790
ath-u.5
for
FAC19
bra-r.6
for
103872080
bra-r.6
for
103829634
bna-r.1
for
106358457
cit-r.1
for
102617622
cit-r.1
for
102617497
gma-u.5
for
100775312
vvi-u.5
for
100243250
ppo-u.5
for
7494379
mtr-u.5
for
25489783
mtr-u.5
for
11420328
sly-u.5
for
101266822
sot-r.1
for
102582865
nta-r.1
for
107780386


Ortholog ID: 11657
Species ghi ghi ghi ath ath bra bra bna cit cit gma vvi ppo mtr mtr sly sot nta
Symbol LOC107959576 LOC107944899 LOC107959433 AT2G26790 FAC19 LOC103872080 LOC103829634 LOC106358457 LOC102617622 LOC102617497 LOC100775312 LOC100243250 LOC7494379 LOC25489783 LOC11420328 LOC101266822 LOC102582865 LOC107780386
Function* pentatricopeptide repeat-containing protein At2g26790, mitochondrial uncharacterized LOC107944899 pentatricopeptide repeat-containing protein At2g26790, mitochondrial-like Pentatricopeptide repeat (PPR) superfamily protein Tetratricopeptide repeat (TPR)-like superfamily protein putative pentatricopeptide repeat-containing protein At1g13800 pentatricopeptide repeat-containing protein At2g26790, mitochondrial pentatricopeptide repeat-containing protein At2g26790, mitochondrial pentatricopeptide repeat-containing protein At2g26790, mitochondrial-like pentatricopeptide repeat-containing protein At2g26790, mitochondrial-like pentatricopeptide repeat-containing protein At2g26790, mitochondrial pentatricopeptide repeat-containing protein At2g26790, mitochondrial pentatricopeptide repeat-containing protein At2g26790, mitochondrial pentatricopeptide repeat-containing protein At2g26790, mitochondrial pentatricopeptide repeat-containing protein At2g26790, mitochondrial pentatricopeptide repeat-containing protein At2g26790, mitochondrial pentatricopeptide repeat-containing protein At2g26790, mitochondrial uncharacterized LOC107780386
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 6
bra03013 Nucleocytoplasmic transport 3
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
sly03020 RNA polymerase 3
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107959576 107944899 107959433 817220 837941 103872080 103829634 106358457 102617622 102617497 100775312 100243250 7494379 25489783 11420328 101266822 102582865 107780386
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