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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107960196   proline--tRNA ligase, cytoplasmic 
 ghi-r.1   107945987   proline--tRNA ligase, cytoplasmic 
 ghi-r.1   121230903   proline--tRNA ligase, cytoplasmic 
 ghi-r.1   107922884   proline--tRNA ligase, cytoplasmic 
 ath-u.5   AT3G62120   Class II aaRS and biotin synthetases superfamily protein 
 bra-r.6   103830343   proline--tRNA ligase, cytoplasmic 
 bra-r.6   103842040   proline--tRNA ligase, cytoplasmic 
 bna-r.1   111211376   proline--tRNA ligase, cytoplasmic-like 
 bna-r.1   106353307   proline--tRNA ligase, cytoplasmic-like 
 cit-r.1   102619621   proline--tRNA ligase, cytoplasmic-like 
 cit-r.1   102629638   proline--tRNA ligase, cytoplasmic 
 gma-u.5   100816763   proline--tRNA ligase, cytoplasmic 
 gma-u.5   100782067   proline--tRNA ligase, cytoplasmic 
 vvi-u.5   100253683   proline--tRNA ligase, cytoplasmic 
 ppo-u.5   7481445   proline--tRNA ligase, cytoplasmic 
 ppo-u.5   7486842   proline--tRNA ligase, cytoplasmic 
 mtr-u.5   11428666   proline--tRNA ligase, cytoplasmic 
 sly-u.5   101262197   proline--tRNA ligase, cytoplasmic-like 
 sly-u.5   101260238   proline--tRNA ligase, cytoplasmic 
 sot-r.1   102578711   proline--tRNA ligase, cytoplasmic-like 
 sot-r.1   102603089   proline--tRNA ligase, cytoplasmic-like 
 nta-r.1   107765319   proline--tRNA ligase, cytoplasmic-like 
 nta-r.1   107829030   proline--tRNA ligase, cytoplasmic 
 nta-r.1   107825813   proline--tRNA ligase, cytoplasmic-like 
 osa-u.5   4352148   proline--tRNA ligase, cytoplasmic 
 zma-u.5   103648437   proline--tRNA ligase, cytoplasmic 
 zma-u.5   100272402   Proline--tRNA ligase cytoplasmic 
 tae-r.2   123151141   proline--tRNA ligase, cytoplasmic 
 tae-r.2   123071931   proline--tRNA ligase, cytoplasmic 
 tae-r.2   123063035   proline--tRNA ligase, cytoplasmic 
 hvu-r.1   123445187   proline--tRNA ligase, cytoplasmic-like 
 sbi-r.1   8064145   proline--tRNA ligase, cytoplasmic 
 sbi-r.1   8060550   proline--tRNA ligase, cytoplasmic 
 bdi-r.1   100845525   proline--tRNA ligase, cytoplasmic 
 cre-r.1   CHLRE_10g429100v5   uncharacterized protein 

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Top 50 coexpressed genes to 107960196 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107960196 (ghi-r.1 coexpression data)

CoexMap"107960196"


ghiLOC107960196 | Entrez gene ID : 107960196    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 1 2 2 2 2 1 2 1 2 2 3 1 2 3 1 2 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00970 [list] [network] Aminoacyl-tRNA biosynthesis (172 genes)
GO BP
GO:0006433 [list] [network] prolyl-tRNA aminoacylation  (13 genes)  IEA  
GO CC
GO:0017101 [list] [network] aminoacyl-tRNA synthetase multienzyme complex  (16 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (13864 genes)  IEA  
GO MF
GO:0004827 [list] [network] proline-tRNA ligase activity  (13 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (5155 genes)  IEA  
Protein XP_016751965.2 [sequence] [blastp]
XP_040952274.1 [sequence] [blastp]
XP_040952275.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 2,  mito 1  (predict for XP_016751965.2)
cyto 6,  nucl 1,  mito 1,  chlo 1,  cysk 1,  cyto_mito 1,  nucl_plas 1,  mito_plas 1  (predict for XP_040952274.1)
cyto 8,  chlo 1,  nucl 1,  cysk 1,  cysk_nucl 1  (predict for XP_040952275.1)
Subcellular
localization
TargetP
other 9  (predict for XP_016751965.2)
other 9  (predict for XP_040952274.1)
other 9  (predict for XP_040952275.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107960196
ghi-r.1
for
107945987
ghi-r.1
for
121230903
ghi-r.1
for
107922884
ath-u.5
for
AT3G62120
bra-r.6
for
103830343
bra-r.6
for
103842040
bna-r.1
for
111211376
bna-r.1
for
106353307
cit-r.1
for
102619621
cit-r.1
for
102629638
gma-u.5
for
100816763
gma-u.5
for
100782067
vvi-u.5
for
100253683
ppo-u.5
for
7481445
ppo-u.5
for
7486842
mtr-u.5
for
11428666
sly-u.5
for
101262197
sly-u.5
for
101260238
sot-r.1
for
102578711
sot-r.1
for
102603089
nta-r.1
for
107765319
nta-r.1
for
107829030
nta-r.1
for
107825813
osa-u.5
for
4352148
zma-u.5
for
103648437
zma-u.5
for
100272402
tae-r.2
for
123151141
tae-r.2
for
123071931
tae-r.2
for
123063035
hvu-r.1
for
123445187
sbi-r.1
for
8064145
sbi-r.1
for
8060550
bdi-r.1
for
100845525
cre-r.1
for
CHLRE_10g429100v5


Ortholog ID: 3948
Species ghi ghi ghi ath bra bra bna bna cit cit gma gma vvi ppo ppo mtr sly sly sot sot nta nta nta osa zma zma tae tae tae hvu sbi sbi bdi cre
Symbol LOC107960196 LOC107945987 LOC121230903 AT3G62120 LOC103830343 LOC103842040 LOC111211376 LOC106452003 LOC102619621 LOC102629638 LOC100816763 LOC100782067 LOC100253683 LOC7481445 LOC7486842 LOC11428666 LOC101262197 LOC101260238 LOC102578711 LOC102603089 LOC107765319 LOC107829030 LOC107795810 LOC4352148 LOC103648437 LOC100272402 LOC123151141 LOC123181590 LOC123080244 LOC123445187 LOC8064145 LOC8060550 LOC100845525 CHLRE_10g429100v5
Function* proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic Class II aaRS and biotin synthetases superfamily protein proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic-like proline--tRNA ligase, cytoplasmic-like proline--tRNA ligase, cytoplasmic-like proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic-like proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic-like proline--tRNA ligase, cytoplasmic-like proline--tRNA ligase, cytoplasmic-like proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic-like proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic Proline--tRNA ligase cytoplasmic proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic-like proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 5
bra00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 3
bra03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 6
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 5
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
cit00970 Aminoacyl-tRNA biosynthesis 4
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00020 Citrate cycle (TCA cycle) 3
gma01200 Carbon metabolism 3
gma00970 Aminoacyl-tRNA biosynthesis 3
gma03040 Spliceosome 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 6
gma00970 Aminoacyl-tRNA biosynthesis 6
gma00480 Glutathione metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 3
vvi03013 Nucleocytoplasmic transport 2
vvi03015 mRNA surveillance pathway 2
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 7
ppo00970 Aminoacyl-tRNA biosynthesis 2
ppo00020 Citrate cycle (TCA cycle) 2
ppo01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 11
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 3
sly03013 Nucleocytoplasmic transport 3
sly03008 Ribosome biogenesis in eukaryotes 2
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 4
sot01230 Biosynthesis of amino acids 3
sot00970 Aminoacyl-tRNA biosynthesis 2
sot04141 Protein processing in endoplasmic reticulum 2
sot00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 3
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 6
nta00540 Lipopolysaccharide biosynthesis 3
nta00270 Cysteine and methionine metabolism 2
nta00280 Valine, leucine and isoleucine degradation 2
nta00290 Valine, leucine and isoleucine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 6
nta00540 Lipopolysaccharide biosynthesis 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 6
nta00540 Lipopolysaccharide biosynthesis 3
nta00270 Cysteine and methionine metabolism 2
nta00280 Valine, leucine and isoleucine degradation 2
nta00290 Valine, leucine and isoleucine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 11
osa01230 Biosynthesis of amino acids 3
osa00290 Valine, leucine and isoleucine biosynthesis 2
osa00620 Pyruvate metabolism 2
osa01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 11
zma00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 9
zma00450 Selenocompound metabolism 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 13
tae03015 mRNA surveillance pathway 3
tae03010 Ribosome 2
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 4
hvu00010 Glycolysis / Gluconeogenesis 3
hvu00020 Citrate cycle (TCA cycle) 3
hvu00620 Pyruvate metabolism 2
hvu00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 9
sbi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 9
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107960196 107945987 121230903 825385 103830343 103842040 111211376 106452003 102619621 102629638 100816763 100782067 100253683 7481445 7486842 11428666 101262197 101260238 102578711 102603089 107765319 107829030 107795810 4352148 103648437 100272402 123151141 123181590 123080244 123445187 8064145 8060550 100845525 5728120
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