ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107961657	far upstream element-binding protein 1
ghi-r.1	107902822	far upstream element-binding protein 1
ghi-r.1	107914021	far upstream element-binding protein 2
ghi-r.1	107919846	far upstream element-binding protein 2
ath-u.5	AT2G25970	KH domain-containing protein
ath-u.5	AT4G10070	KH domain-containing protein
ath-u.5	AT1G33680	KH domain-containing protein
bra-r.6	103840055	far upstream element-binding protein 2
bra-r.6	103864711	far upstream element-binding protein 1
bra-r.6	103842167	far upstream element-binding protein 1
bna-r.1	106368546	far upstream element-binding protein 1
bna-r.1	106400940	far upstream element-binding protein 1-like
bna-r.1	106413676	far upstream element-binding protein 1-like
cit-r.1	102620563	uncharacterized LOC102620563
cit-r.1	102609390	uncharacterized LOC102609390
gma-u.5	100800173	far upstream element-binding protein 2
gma-u.5	100797476	far upstream element-binding protein 1
gma-u.5	100813135	far upstream element-binding protein 1
vvi-u.5	100259454	uncharacterized LOC100259454
vvi-u.5	100253453	uncharacterized LOC100253453
ppo-u.5	18100653	uncharacterized LOC18100653
ppo-u.5	7455252	uncharacterized LOC7455252
ppo-u.5	18104348	uncharacterized LOC18104348
mtr-u.5	11420367	far upstream element-binding protein 2
mtr-u.5	11423244	far upstream element-binding protein 1
mtr-u.5	11432333	far upstream element-binding protein 1
sly-u.5	101267010	uncharacterized LOC101267010
sly-u.5	101264287	uncharacterized LOC101264287
sot-r.1	102578344	far upstream element-binding protein 2
sot-r.1	102583099	far upstream element-binding protein 2
sot-r.1	102595397	far upstream element-binding protein 2-like
nta-r.1	107774458	uncharacterized LOC107774458
nta-r.1	107779386	uncharacterized LOC107779386
nta-r.1	107779634	uncharacterized LOC107779634
osa-u.5	9266838	uncharacterized LOC9266838
osa-u.5	4328770	uncharacterized LOC4328770
zma-u.5	100279814	uncharacterized LOC100279814
zma-u.5	100273619	KH domain-containing protein
zma-u.5	100191655	KH domain-containing protein
tae-r.2	123064681	poly(rC)-binding protein 1
tae-r.2	123165864	far upstream element-binding protein 2
tae-r.2	123084267	uncharacterized LOC123084267
hvu-r.1	123411206	far upstream element-binding protein 1-like
sbi-r.1	110437096	far upstream element-binding protein 1-like
sbi-r.1	8059182	far upstream element-binding protein 1
sbi-r.1	8073784	far upstream element-binding protein 2
bdi-r.1	100834117	far upstream element-binding protein 2
bdi-r.1	100835547	far upstream element-binding protein 1
cre-r.1	CHLRE_06g250800v5	uncharacterized protein

Top 50 coexpressed genes to 107961657 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107961657 (ghi-r.1 coexpression data)

CoexMap"107961657"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0010468 [list] [network] regulation of gene expression

(5166 genes)

IEA

GO CC

GO:0005737 [list] [network] cytoplasm

(13864 genes)

IEA

GO MF

GO:0003729 [list] [network] mRNA binding

(890 genes)

IEA

Protein

XP_016753217.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9

(predict for XP_016753217.1)

Subcellular
localization
TargetP

other 8, chlo 4

(predict for XP_016753217.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107961657	ghi-r.1 for 107902822	ghi-r.1 for 107914021	ghi-r.1 for 107919846	ath-u.5 for AT2G25970	ath-u.5 for AT4G10070	ath-u.5 for AT1G33680	bra-r.6 for 103840055	bra-r.6 for 103864711	bra-r.6 for 103842167	bna-r.1 for 106368546	bna-r.1 for 106400940	bna-r.1 for 106413676	cit-r.1 for 102620563	cit-r.1 for 102609390	gma-u.5 for 100800173	gma-u.5 for 100797476	gma-u.5 for 100813135	vvi-u.5 for 100259454	vvi-u.5 for 100253453	ppo-u.5 for 18100653	ppo-u.5 for 7455252	ppo-u.5 for 18104348	mtr-u.5 for 11420367	mtr-u.5 for 11423244	mtr-u.5 for 11432333	sly-u.5 for 101267010	sly-u.5 for 101264287	sot-r.1 for 102578344	sot-r.1 for 102583099	sot-r.1 for 102595397	nta-r.1 for 107774458	nta-r.1 for 107779386	nta-r.1 for 107779634	osa-u.5 for 9266838	osa-u.5 for 4328770	zma-u.5 for 100279814	zma-u.5 for 100273619	zma-u.5 for 100191655	tae-r.2 for 123064681	tae-r.2 for 123165864	tae-r.2 for 123084267	hvu-r.1 for 123411206	sbi-r.1 for 110437096	sbi-r.1 for 8059182	sbi-r.1 for 8073784	bdi-r.1 for 100834117	bdi-r.1 for 100835547	cre-r.1 for CHLRE_06g250800v5

Ortholog

Ortholog ID: 1531

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

far upstream element-binding protein 1

far upstream element-binding protein 2

far upstream element-binding protein 1

KH domain-containing protein

far upstream element-binding protein 2

far upstream element-binding protein 1

far upstream element-binding protein 1-like

uncharacterized LOC102620563

uncharacterized LOC102609390

far upstream element-binding protein 1

uncharacterized LOC100259454

uncharacterized LOC100253453

uncharacterized LOC7455252

uncharacterized LOC18104348

uncharacterized LOC7463740

far upstream element-binding protein 1

far upstream element-binding protein 2

uncharacterized LOC101267010

uncharacterized LOC101264287

far upstream element-binding protein 2

far upstream element-binding protein 2-like

uncharacterized LOC107779386

uncharacterized LOC107779634

uncharacterized LOC107801401

uncharacterized LOC9266838

uncharacterized LOC4328770

uncharacterized LOC100279814

KH domain-containing protein

uncharacterized LOC100193964

far upstream element-binding protein 1

far upstream element-binding protein 2

far upstream element-binding protein 1-like

far upstream element-binding protein 1

far upstream element-binding protein 2

far upstream element-binding protein 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03440	Homologous recombination	2
ghi03460	Fanconi anemia pathway	2
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	2
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	6
ath03013	Nucleocytoplasmic transport	3
ath03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	4
ath03015	mRNA surveillance pathway	3
ath04120	Ubiquitin mediated proteolysis	2
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	4
ath03018	RNA degradation	2
ath03082	ATP-dependent chromatin remodeling	2
ath03083	Polycomb repressive complex	2
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3
bra03082	ATP-dependent chromatin remodeling	3
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4
cit03015	mRNA surveillance pathway	3
cit03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	5
gma03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3
vvi03013	Nucleocytoplasmic transport	2
vvi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	7
ppo00970	Aminoacyl-tRNA biosynthesis	2
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	3
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	3
nta03018	RNA degradation	3
nta00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	4
osa03015	mRNA surveillance pathway	3
osa03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	3
tae03015	mRNA surveillance pathway	3
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01240	Biosynthesis of cofactors	2
hvu00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03410	Base excision repair	2
sbi03040	Spliceosome	2
sbi00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	11

Expression

Expression pattern

Entrez Gene ID^*

107961657

107914021

107895341

817137

826598

840259

103840055

103864711

103842167

106368546

106413676

106448684

102620563

102609390

100797476

100813135

100782717

100259454

100253453

7455252

18104348

7463740

11423244

11432333

11439962

101267010

101264287

102578344

102583099

102595397

107779386

107779634

107801401

9266838

4328770

100279814

100191655

100193964

123158361

123147603

123144471

123411206

123396419

110437096

8059182

8073784

100834117

100835547

5722206

The preparation time of this page was 3.5 [sec].


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	3	2	3	2	3	3	2	3	3	2	3	3	1	3	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107961657 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107961657 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**