Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   111200843   sm-like protein LSM4 
 bna-r.1   125575912   sm-like protein LSM4 
 bna-r.1   106348688   sm-like protein LSM4 
 bra-r.6   103874515   sm-like protein LSM4 
 bra-r.6   103837167   sm-like protein LSM4 
 ath-u.5   emb1644   Small nuclear ribonucleoprotein family protein 
 ghi-r.1   107949669   sm-like protein LSM4 
 ghi-r.1   107946085   sm-like protein LSM4 
 ghi-r.1   107931236   probable U6 snRNA-associated Sm-like protein LSm4 
 cit-r.1   102620919   probable U6 snRNA-associated Sm-like protein LSm4 
 cit-r.1   102613630   probable U6 snRNA-associated Sm-like protein LSm4 
 gma-u.5   100815676   putative sm-like protein LSM4 
 gma-u.5   100786834   small nuclear RNP family protein 
 gma-u.5   100500134   small nuclear ribonucleoprotein family protein 
 vvi-u.5   100241738   probable U6 snRNA-associated Sm-like protein LSm4 
 vvi-u.5   100242667   probable U6 snRNA-associated Sm-like protein LSm4 
 ppo-u.5   7487777   probable U6 snRNA-associated Sm-like protein LSm4 
 ppo-u.5   7491308   probable U6 snRNA-associated Sm-like protein LSm4 
 mtr-u.5   11430696   sm-like protein LSM4 
 mtr-u.5   11426059   sm-like protein LSM4 
 sly-u.5   101255434   probable U6 snRNA-associated Sm-like protein LSm4 
 sot-r.1   102583085   probable U6 snRNA-associated Sm-like protein LSm4-like 
 sot-r.1   102606056   probable U6 snRNA-associated Sm-like protein LSm4 
 nta-r.1   107763411   probable U6 snRNA-associated Sm-like protein LSm4 
 nta-r.1   107827588   putative U6 snRNA-associated Sm-like protein LSm4 
 nta-r.1   107781164   sm-like protein LSM4 
 osa-u.5   4326227   probable U6 snRNA-associated Sm-like protein LSm4 
 zma-u.5   100285873   U6 snRNA-associated Sm-like protein LSm4 
 zma-u.5   118473076   probable U6 snRNA-associated Sm-like protein LSm4 
 tae-r.2   123060984   probable U6 snRNA-associated Sm-like protein LSm4 
 tae-r.2   123069570   probable U6 snRNA-associated Sm-like protein LSm4 
 tae-r.2   123078062   probable U6 snRNA-associated Sm-like protein LSm4 
 hvu-r.1   123443408   probable U6 snRNA-associated Sm-like protein LSm4 
 sbi-r.1   8073979   probable U6 snRNA-associated Sm-like protein LSm4 
 bdi-r.1   100821596   probable U6 snRNA-associated Sm-like protein LSm4 
 cre-r.1   CHLRE_06g251300v5   uncharacterized protein 

close


Top 50 coexpressed genes to 111200843 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to 111200843 (bna-r.1 coexpression data)

CoexMap"111200843"


bnaLOC111200843 | Entrez gene ID : 111200843    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 2 1 3 2 3 2 2 2 1 2 3 1 2 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03018 [list] [network] RNA degradation (380 genes)
bna03040 [list] [network] Spliceosome (912 genes)
GO BP
GO:0033962 [list] [network] P-body assembly  (48 genes)  IEA  
GO:0000387 [list] [network] spliceosomal snRNP assembly  (90 genes)  IEA  
GO:0000956 [list] [network] nuclear-transcribed mRNA catabolic process  (180 genes)  IEA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (548 genes)  IEA  
GO CC
GO:0005688 [list] [network] U6 snRNP  (34 genes)  IEA  
GO:0097526 [list] [network] spliceosomal tri-snRNP complex  (117 genes)  IEA  
GO:0000932 [list] [network] P-body  (160 genes)  IEA  
GO MF
GO:0017070 [list] [network] U6 snRNA binding  (28 genes)  IEA  
Protein XP_022547981.1 [sequence] [blastp]
Subcellular
localization
wolf
extr 6,  cyto 1,  mito 1,  chlo 1,  cysk 1,  cyto_nucl 1,  cyto_mito 1,  cyto_pero 1,  mito_plas 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_022547981.1)
Subcellular
localization
TargetP
other 6  (predict for XP_022547981.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
111200843
bna-r.1
for
125575912
bna-r.1
for
106348688
bra-r.6
for
103874515
bra-r.6
for
103837167
ath-u.5
for
emb1644
ghi-r.1
for
107949669
ghi-r.1
for
107946085
ghi-r.1
for
107931236
cit-r.1
for
102620919
cit-r.1
for
102613630
gma-u.5
for
100815676
gma-u.5
for
100786834
gma-u.5
for
100500134
vvi-u.5
for
100241738
vvi-u.5
for
100242667
ppo-u.5
for
7487777
ppo-u.5
for
7491308
mtr-u.5
for
11430696
mtr-u.5
for
11426059
sly-u.5
for
101255434
sot-r.1
for
102583085
sot-r.1
for
102606056
nta-r.1
for
107763411
nta-r.1
for
107827588
nta-r.1
for
107781164
osa-u.5
for
4326227
zma-u.5
for
100285873
zma-u.5
for
118473076
tae-r.2
for
123060984
tae-r.2
for
123069570
tae-r.2
for
123078062
hvu-r.1
for
123443408
sbi-r.1
for
8073979
bdi-r.1
for
100821596
cre-r.1
for
CHLRE_06g251300v5


Ortholog ID: 4977
Species bna bna bra bra ath ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo mtr mtr sly sot sot nta nta nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol LOC111200843 LOC106348688 LOC103874515 LOC103837167 emb1644 LOC107946085 LOC107931236 LOC107917334 LOC102620919 LOC102613630 LOC100815676 LOC100786834 LOC100500134 LOC100241738 LOC100242667 LOC7487777 LOC7491308 LOC11430696 LOC11426059 LOC101255434 LOC102583085 LOC102606056 LOC107827588 LOC107781164 LOC107769372 LOC4326227 LOC100285873 LOC118473076 LOC123060984 LOC123069570 LOC123078062 LOC123443408 LOC8073979 LOC100821596 CHLRE_06g251300v5
Function* sm-like protein LSM4 sm-like protein LSM4 sm-like protein LSM4 sm-like protein LSM4 Small nuclear ribonucleoprotein family protein sm-like protein LSM4 probable U6 snRNA-associated Sm-like protein LSm4 sm-like protein LSM4 probable U6 snRNA-associated Sm-like protein LSm4 probable U6 snRNA-associated Sm-like protein LSm4 putative sm-like protein LSM4 small nuclear RNP family protein small nuclear ribonucleoprotein family protein probable U6 snRNA-associated Sm-like protein LSm4 probable U6 snRNA-associated Sm-like protein LSm4 probable U6 snRNA-associated Sm-like protein LSm4 probable U6 snRNA-associated Sm-like protein LSm4 sm-like protein LSM4 sm-like protein LSM4 probable U6 snRNA-associated Sm-like protein LSm4 probable U6 snRNA-associated Sm-like protein LSm4-like probable U6 snRNA-associated Sm-like protein LSm4 putative U6 snRNA-associated Sm-like protein LSm4 sm-like protein LSM4 putative U6 snRNA-associated Sm-like protein LSm4 probable U6 snRNA-associated Sm-like protein LSm4 U6 snRNA-associated Sm-like protein LSm4 probable U6 snRNA-associated Sm-like protein LSm4 probable U6 snRNA-associated Sm-like protein LSm4 probable U6 snRNA-associated Sm-like protein LSm4 probable U6 snRNA-associated Sm-like protein LSm4 probable U6 snRNA-associated Sm-like protein LSm4 probable U6 snRNA-associated Sm-like protein LSm4 probable U6 snRNA-associated Sm-like protein LSm4 uncharacterized protein
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
bna03018 RNA degradation 4
bna03060 Protein export 2
bna03020 RNA polymerase 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
bna03040 Spliceosome 4
bna03020 RNA polymerase 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 6
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 8
ghi03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00190 Oxidative phosphorylation 4
cit03013 Nucleocytoplasmic transport 4
cit03040 Spliceosome 4
cit03015 mRNA surveillance pathway 3
cit03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit03060 Protein export 2
cit03013 Nucleocytoplasmic transport 2
cit03015 mRNA surveillance pathway 2
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03010 Ribosome 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
gma03040 Spliceosome 2
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 4
gma03010 Ribosome 4
gma03040 Spliceosome 2
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03013 Nucleocytoplasmic transport 2
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 11
ppo03018 RNA degradation 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
ppo03010 Ribosome 4
ppo03050 Proteasome 3
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 5
mtr03020 RNA polymerase 2
mtr03420 Nucleotide excision repair 2
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 6
sly00190 Oxidative phosphorylation 3
sly03018 RNA degradation 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03022 Basal transcription factors 4
sot03018 RNA degradation 3
sot03040 Spliceosome 3
sot03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03022 Basal transcription factors 4
sot03018 RNA degradation 3
sot03040 Spliceosome 3
sot03083 Polycomb repressive complex 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 5
nta03018 RNA degradation 4
nta03040 Spliceosome 4
nta03440 Homologous recombination 4
nta00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 6
nta03018 RNA degradation 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 4
nta03040 Spliceosome 4
nta03050 Proteasome 4
nta03440 Homologous recombination 4
nta00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 8
osa03040 Spliceosome 6
osa03018 RNA degradation 4
osa03013 Nucleocytoplasmic transport 3
osa03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 12
zma03015 mRNA surveillance pathway 3
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 4
zma03040 Spliceosome 4
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 5
tae03040 Spliceosome 5
tae03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 9
tae03040 Spliceosome 4
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 4
tae03018 RNA degradation 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 5
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
bdi03050 Proteasome 3
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 6
cre03050 Proteasome 5
cre03013 Nucleocytoplasmic transport 2
cre03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 111200843 106348688 103874515 103837167 832834 107946085 107931236 107917334 102620919 102613630 100815676 100786834 100500134 100241738 100242667 7487777 7491308 11430696 11426059 101255434 102583085 102606056 107827588 107781164 107769372 4326227 100285873 118473076 123060984 123069570 123078062 123443408 8073979 100821596 5722195
The preparation time of this page was 0.2 [sec].