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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   111200858   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like 
 bna-r.1   111211549   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like 
 bna-r.1   111201379   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6-like 
 bra-r.6   103843480   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 
 bra-r.6   103837296   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 
 bra-r.6   103832357   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 
 ath-u.5   LSH3   LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 
 ath-u.5   LSH5   LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 
 ghi-r.1   107913592   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 
 ghi-r.1   107914954   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 
 ghi-r.1   107914995   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 
 cit-r.1   102610331   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6-like 
 cit-r.1   102610630   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 
 cit-r.1   102628291   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 
 gma-u.5   100803605   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 
 gma-u.5   100806134   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 
 vvi-u.5   100266079   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 
 vvi-u.5   104879291   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 
 vvi-u.5   100244642   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 
 ppo-u.5   18095487   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 
 ppo-u.5   7458006   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 
 ppo-u.5   7458242   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 
 mtr-u.5   25484251   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 
 mtr-u.5   25485963   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 
 sly-u.5   101253723   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 
 sly-u.5   101252299   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like 
 sly-u.5   TFAM2   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 
 sot-r.1   102596443   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 
 sot-r.1   102596568   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like 
 sot-r.1   102600485   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like 
 nta-r.1   107794180   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 
 nta-r.1   142167453   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like 
 nta-r.1   107793501   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like 
 osa-u.5   4338491   protein G1-like9 
 osa-u.5   107278201   protein G1-like8 
 osa-u.5   9266624   protein G1-like5 
 zma-u.5   100274783   putative protein of unknown function (DUF640) domain family protein 
 zma-u.5   100275232   putative protein of unknown function (DUF640) domain family protein 
 zma-u.5   100278049   uncharacterized LOC100278049 
 tae-r.2   123059860   protein G1-like7 
 tae-r.2   123053999   protein G1-like4 
 hvu-r.1   123427243   protein G1-like4 
 hvu-r.1   123444893   protein G1-like8 
 sbi-r.1   8072493   protein G1-like4 
 sbi-r.1   8054276   protein G1-like4 
 sbi-r.1   8057742   protein G1-like7 
 bdi-r.1   100842541   protein G1-like7 
 bdi-r.1   100837100   protein G1-like3 
 bdi-r.1   100836663   protein G1-like6 

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Top 50 coexpressed genes to 111200858 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 111200858 (bna-r.1 coexpression data)

CoexMap"111200858"


bnaLOC111200858 | Entrez gene ID : 111200858    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 3 2 3 3 2 3 3 2 3 3 3 3 3 2 2 3 3 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009299 [list] [network] mRNA transcription  (62 genes)  IEA  
GO:0009416 [list] [network] response to light stimulus  (379 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
Protein XP_022548008.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  mito 3,  chlo 2  (predict for XP_022548008.2)
Subcellular
localization
TargetP
chlo 8,  other 4  (predict for XP_022548008.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
111200858
bna-r.1
for
111211549
bna-r.1
for
111201379
bra-r.6
for
103843480
bra-r.6
for
103837296
bra-r.6
for
103832357
ath-u.5
for
LSH3
ath-u.5
for
LSH5
ghi-r.1
for
107913592
ghi-r.1
for
107914954
ghi-r.1
for
107914995
cit-r.1
for
102610331
cit-r.1
for
102610630
cit-r.1
for
102628291
gma-u.5
for
100803605
gma-u.5
for
100806134
vvi-u.5
for
100266079
vvi-u.5
for
104879291
vvi-u.5
for
100244642
ppo-u.5
for
18095487
ppo-u.5
for
7458006
ppo-u.5
for
7458242
mtr-u.5
for
25484251
mtr-u.5
for
25485963
sly-u.5
for
101253723
sly-u.5
for
101252299
sly-u.5
for
TFAM2
sot-r.1
for
102596443
sot-r.1
for
102596568
sot-r.1
for
102600485
nta-r.1
for
107794180
nta-r.1
for
142167453
nta-r.1
for
107793501
osa-u.5
for
4338491
osa-u.5
for
107278201
osa-u.5
for
9266624
zma-u.5
for
100274783
zma-u.5
for
100275232
zma-u.5
for
100278049
tae-r.2
for
123059860
tae-r.2
for
123053999
hvu-r.1
for
123427243
hvu-r.1
for
123444893
sbi-r.1
for
8072493
sbi-r.1
for
8054276
sbi-r.1
for
8057742
bdi-r.1
for
100842541
bdi-r.1
for
100837100
bdi-r.1
for
100836663


Ortholog ID: 68
Species bna bna bna bra bra bra ath ath ghi ghi ghi cit cit cit gma gma gma vvi vvi vvi ppo ppo ppo mtr mtr sly sly sly sot sot sot nta nta nta osa osa osa zma zma zma tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi
Symbol LOC106391304 LOC125602819 LOC125599502 LOC103828755 LOC103874577 LOC103865110 LSH3 LSH6 LOC107905816 LOC107958534 LOC107936786 LOC102610331 LOC102612277 LOC102606613 LOC100803605 LOC102663941 LOC100778283 LOC100266079 LOC100249172 LOC100260366 LOC7467540 LOC7474992 LOC7460096 LOC11408401 LOC11407427 LOC101244207 LOC101256738 LOC101261831 LOC102600485 LOC102583639 LOC107058264 LOC107794180 LOC107760918 LOC107766017 LOC4336401 LOC4330024 LOC107278610 LOC100275232 LOC100304411 LOC100381724 LOC123182342 LOC123181080 LOC123427243 LOC123444893 LOC123402509 LOC8072493 LOC8054276 LOC8076105 LOC100826147 LOC100822544 LOC100821276
Function* protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-like protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6-like protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like hypothetical protein protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 protein G1-like4 protein G1-like3 protein G1-like7 putative protein of unknown function (DUF640) domain family protein putative protein of unknown function (DUF640) domain family protein putative protein of unknown function (DUF640) domain family protein protein G1-like7 protein G1-like5 protein G1-like4 protein G1-like8 protein G1-like3 protein G1-like4 protein G1-like4 protein G1-like1 protein G1-like5 protein G1-like1 protein G1-like4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00940 Phenylpropanoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 6
ath04016 MAPK signaling pathway - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00061 Fatty acid biosynthesis 3
cit01040 Biosynthesis of unsaturated fatty acids 3
cit01212 Fatty acid metabolism 3
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03083 Polycomb repressive complex 2
cit04120 Ubiquitin mediated proteolysis 2
cit04141 Protein processing in endoplasmic reticulum 2
cit03040 Spliceosome 2
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00940 Phenylpropanoid biosynthesis 3
vvi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
vvi00941 Flavonoid biosynthesis 2
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00730 Thiamine metabolism 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00270 Cysteine and methionine metabolism 3
sot00920 Sulfur metabolism 3
sot01200 Carbon metabolism 3
sot01230 Biosynthesis of amino acids 3
sot04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106391304 125602819 125599502 103828755 103874577 103865110 817672 837220 107905816 107958534 107936786 102610331 102612277 102606613 100803605 102663941 100778283 100266079 100249172 100260366 7467540 7474992 7460096 11408401 11407427 101244207 101256738 101261831 102600485 102583639 107058264 107794180 107760918 107766017 4336401 4330024 107278610 100275232 100304411 100381724 123182342 123181080 123427243 123444893 123402509 8072493 8054276 8076105 100826147 100822544 100821276
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