ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	111200978	putative E3 ubiquitin-protein ligase RING1a
bna-r.1	106427506	putative E3 ubiquitin-protein ligase RING1a
bna-r.1	106418239	putative E3 ubiquitin-protein ligase RING1a
bra-r.6	103839324	putative E3 ubiquitin-protein ligase RING1a
bra-r.6	103827915	putative E3 ubiquitin-protein ligase RING1a
ath-u.5	RING1A	RING 1A
ath-u.5	RING1B	RING 1B
ghi-r.1	107961732	putative E3 ubiquitin-protein ligase RING1a
ghi-r.1	107946176	putative E3 ubiquitin-protein ligase RING1a
ghi-r.1	107934721	putative E3 ubiquitin-protein ligase RING1a
cit-r.1	102608198	putative E3 ubiquitin-protein ligase RING1a
cit-r.1	102616925	putative E3 ubiquitin-protein ligase RING1a
gma-u.5	100819311	putative E3 ubiquitin-protein ligase RING1a
gma-u.5	100801911	putative E3 ubiquitin-protein ligase RING1a
vvi-u.5	100267448	putative E3 ubiquitin-protein ligase RING1a
vvi-u.5	100267677	putative E3 ubiquitin-protein ligase RING1a
ppo-u.5	18106779	putative E3 ubiquitin-protein ligase RING1a
ppo-u.5	7459955	putative E3 ubiquitin-protein ligase RING1a
ppo-u.5	7456782	putative E3 ubiquitin-protein ligase RING1a
mtr-u.5	25493116	putative E3 ubiquitin-protein ligase RING1a
sly-u.5	101248496	putative E3 ubiquitin-protein ligase RING1a
sly-u.5	101258122	putative E3 ubiquitin-protein ligase RING1a
sot-r.1	102605523	putative E3 ubiquitin-protein ligase RING1a
sot-r.1	102581735	putative E3 ubiquitin-protein ligase RING1a
nta-r.1	107798106	putative E3 ubiquitin-protein ligase RING1a
nta-r.1	107792781	putative E3 ubiquitin-protein ligase RING1a
nta-r.1	107777823	putative E3 ubiquitin-protein ligase RING1a
osa-u.5	9272357	putative E3 ubiquitin-protein ligase RING1a
osa-u.5	4327619	putative E3 ubiquitin-protein ligase RING1a
zma-u.5	100279610	putative RING zinc finger domain superfamily protein
zma-u.5	100383546	putative RING zinc finger domain superfamily protein
zma-u.5	100281596	Putative E3 ubiquitin-protein ligase RING1
tae-r.2	123061139	putative E3 ubiquitin-protein ligase RING1a
tae-r.2	123062299	putative E3 ubiquitin-protein ligase RING1a
tae-r.2	123071060	putative E3 ubiquitin-protein ligase RING1a
hvu-r.1	123444611	putative E3 ubiquitin-protein ligase RING1a
hvu-r.1	123443642	putative E3 ubiquitin-protein ligase RING1a
sbi-r.1	8060463	putative E3 ubiquitin-protein ligase RING1a
sbi-r.1	8065145	putative E3 ubiquitin-protein ligase RING1a
sbi-r.1	8064193	putative E3 ubiquitin-protein ligase RING1a
bdi-r.1	100833980	putative E3 ubiquitin-protein ligase RING1a
bdi-r.1	100846593	putative E3 ubiquitin-protein ligase RING1a
cre-r.1	CHLRE_04g213800v5	uncharacterized protein

Top 50 coexpressed genes to 111200978 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 111200978 (bna-r.1 coexpression data)

CoexMap"111200978"

[Cytoscape]

Annotation

functional annotation

KEGG

bna03083 [list] [network] Polycomb repressive complex (189 genes)

GO BP

GO CC

GO MF

Protein

XP_022548407.2 [sequence] [blastp]
XP_022548408.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9	(predict for XP_022548407.2)
nucl 9	(predict for XP_022548408.2)

Subcellular
localization
TargetP

other 8	(predict for XP_022548407.2)
other 8	(predict for XP_022548408.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 111200978	bna-r.1 for 106427506	bna-r.1 for 106418239	bra-r.6 for 103839324	bra-r.6 for 103827915	ath-u.5 for RING1A	ath-u.5 for RING1B	ghi-r.1 for 107961732	ghi-r.1 for 107946176	ghi-r.1 for 107934721	cit-r.1 for 102608198	cit-r.1 for 102616925	gma-u.5 for 100819311	gma-u.5 for 100801911	vvi-u.5 for 100267448	vvi-u.5 for 100267677	ppo-u.5 for 18106779	ppo-u.5 for 7459955	ppo-u.5 for 7456782	mtr-u.5 for 25493116	sly-u.5 for 101248496	sly-u.5 for 101258122	sot-r.1 for 102605523	sot-r.1 for 102581735	nta-r.1 for 107798106	nta-r.1 for 107792781	nta-r.1 for 107777823	osa-u.5 for 9272357	osa-u.5 for 4327619	zma-u.5 for 100279610	zma-u.5 for 100383546	zma-u.5 for 100281596	tae-r.2 for 123061139	tae-r.2 for 123062299	tae-r.2 for 123071060	hvu-r.1 for 123444611	hvu-r.1 for 123443642	sbi-r.1 for 8060463	sbi-r.1 for 8065145	sbi-r.1 for 8064193	bdi-r.1 for 100833980	bdi-r.1 for 100846593	cre-r.1 for CHLRE_04g213800v5

Ortholog

Ortholog ID: 2297

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

RING1A

RING1B

Function^*

putative E3 ubiquitin-protein ligase RING1a

putative E3 ubiquitin-protein ligase RING1b

putative E3 ubiquitin-protein ligase RING1a

RING 1A

RING 1B

putative E3 ubiquitin-protein ligase RING1a

putative RING zinc finger domain superfamily protein

putative E3 ubiquitin-protein ligase RING1a

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03083	Polycomb repressive complex	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03083	Polycomb repressive complex	4
bna00760	Nicotinate and nicotinamide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	13
ghi03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2
gma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	5
gma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2
ppo04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	5
mtr01240	Biosynthesis of cofactors	2
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03020	RNA polymerase	5
sot03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03083	Polycomb repressive complex	2
nta03013	Nucleocytoplasmic transport	2
nta00330	Arginine and proline metabolism	2
nta03022	Basal transcription factors	2
nta03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03083	Polycomb repressive complex	2
nta04148	Efferocytosis	2
nta00510	N-Glycan biosynthesis	2
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03083	Polycomb repressive complex	2
nta03013	Nucleocytoplasmic transport	2
nta00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03083	Polycomb repressive complex	3
zma03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03083	Polycomb repressive complex	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03083	Polycomb repressive complex	6
tae04016	MAPK signaling pathway - plant	3
tae04626	Plant-pathogen interaction	3
tae03082	ATP-dependent chromatin remodeling	3
tae04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03083	Polycomb repressive complex	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04626	Plant-pathogen interaction	2
bdi03083	Polycomb repressive complex	2
bdi01200	Carbon metabolism	2
bdi01230	Biosynthesis of amino acids	2

Expression

Expression pattern

Entrez Gene ID^*

106418239

106411359

106401059

103839324

103827915

834451

839413

107961732

107934721

107901798

102608198

102616925

100819311

100776547

100267448

100267677

7459955

7456782

18103053

25493116

25487685

101248496

101258122

102605523

102581735

107798106

107792781

107777823

9272357

4327619

100279610

100383546

103645322

123062299

123138311

123079431

123444611

123443642

8060463

8065145

8064193

100833980

100846593

5724229

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Species	bna	bra	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	2	2	3	2	2	2	3	1	2	2	3	2	3	3	2	3	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 111200978 (bna-r.1 coexpression data)

Top 50 enrichment test to 111200978 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**