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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   111206486   general transcription and DNA repair factor IIH subunit TFB5 
 bna-r.1   106445585   general transcription and DNA repair factor IIH subunit TFB5 
 ath-u.5   AT1G12400   Nucleotide excision repair, TFIIH, subunit TTDA 
 ghi-r.1   107936378   general transcription and DNA repair factor IIH subunit TFB5 
 ghi-r.1   107946966   general transcription and DNA repair factor IIH subunit TFB5 
 cit-r.1   102612060   general transcription and DNA repair factor IIH subunit TFB5 
 gma-u.5   100785713   general transcription and DNA repair factor IIH subunit TFB5 
 ppo-u.5   18094417   general transcription and DNA repair factor IIH subunit TFB5 
 mtr-u.5   11411289   general transcription and DNA repair factor IIH subunit TFB5 
 mtr-u.5   11406059   general transcription and DNA repair factor IIH subunit TFB5 
 sot-r.1   102604697   uncharacterized LOC102604697 
 osa-u.5   4338052   general transcription and DNA repair factor IIH subunit TFB5 
 osa-u.5   4343686   general transcription and DNA repair factor IIH subunit TFB5 
 zma-u.5   100281631   REX1 DNA Repair family protein 
 tae-r.2   123179906   general transcription and DNA repair factor IIH subunit TFB5 
 tae-r.2   123104723   general transcription and DNA repair factor IIH subunit TFB5 
 tae-r.2   123084789   general transcription and DNA repair factor IIH subunit TFB5 
 hvu-r.1   123439544   general transcription and DNA repair factor IIH subunit TFB5-like 
 sbi-r.1   8068656   RNA polymerase II transcription factor B subunit 5 
 bdi-r.1   104581277   general transcription and DNA repair factor IIH subunit TFB5 

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Top 50 coexpressed genes to 111206486 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 111206486 (bna-r.1 coexpression data)

CoexMap"111206486"


bnaLOC111206486 | Entrez gene ID : 111206486    
Species bna ath ghi cit gma ppo mtr sot osa zma tae hvu sbi bdi vvi sly nta cre bra
Paralog 2 1 2 1 1 1 2 1 2 1 3 1 1 1 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03022 [list] [network] Basal transcription factors (161 genes)
bna03420 [list] [network] Nucleotide excision repair (233 genes)
GO BP
GO:0006294 [list] [network] nucleotide-excision repair, preincision complex assembly  (5 genes)  IEA  
GO:0006367 [list] [network] transcription initiation at RNA polymerase II promoter  (114 genes)  IEA  
GO:0006366 [list] [network] transcription by RNA polymerase II  (198 genes)  IEA  
GO:0006289 [list] [network] nucleotide-excision repair  (212 genes)  IEA  
GO CC
GO:0000439 [list] [network] transcription factor TFIIH core complex  (15 genes)  IEA  
GO:0005675 [list] [network] transcription factor TFIIH holo complex  (38 genes)  IEA  
GO MF
Protein XP_048613980.1 [sequence] [blastp]
XP_048613981.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  nucl 2  (predict for XP_048613980.1)
cyto 7,  nucl 2  (predict for XP_048613981.1)
Subcellular
localization
TargetP
scret 5,  other 3  (predict for XP_048613980.1)
scret 5,  other 3  (predict for XP_048613981.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
111206486
bna-r.1
for
106445585
ath-u.5
for
AT1G12400
ghi-r.1
for
107936378
ghi-r.1
for
107946966
cit-r.1
for
102612060
gma-u.5
for
100785713
ppo-u.5
for
18094417
mtr-u.5
for
11411289
mtr-u.5
for
11406059
sot-r.1
for
102604697
osa-u.5
for
4338052
osa-u.5
for
4343686
zma-u.5
for
100281631
tae-r.2
for
123179906
tae-r.2
for
123104723
tae-r.2
for
123084789
hvu-r.1
for
123439544
sbi-r.1
for
8068656
bdi-r.1
for
104581277


Ortholog ID: 8690
Species bna ath ghi ghi cit gma ppo mtr mtr sot osa osa zma tae tae tae hvu sbi bdi
Symbol LOC106445585 AT1G12400 LOC107936378 LOC107946966 LOC102612060 LOC100785713 LOC18094417 LOC11411289 LOC11406059 LOC102604697 LOC4338052 LOC4343686 LOC100281631 LOC123179906 LOC123104723 LOC123071586 LOC123439544 LOC8068656 LOC104581277
Function* general transcription and DNA repair factor IIH subunit TFB5 Nucleotide excision repair, TFIIH, subunit TTDA general transcription and DNA repair factor IIH subunit TFB5 general transcription and DNA repair factor IIH subunit TFB5 general transcription and DNA repair factor IIH subunit TFB5 general transcription and DNA repair factor IIH subunit TFB5 general transcription and DNA repair factor IIH subunit TFB5 general transcription and DNA repair factor IIH subunit TFB5 general transcription and DNA repair factor IIH subunit TFB5 uncharacterized LOC102604697 general transcription and DNA repair factor IIH subunit TFB5 general transcription and DNA repair factor IIH subunit TFB5 REX1 DNA Repair family protein general transcription and DNA repair factor IIH subunit TFB5 general transcription and DNA repair factor IIH subunit TFB5 general transcription and DNA repair factor IIH subunit TFB5 general transcription and DNA repair factor IIH subunit TFB5-like RNA polymerase II transcription factor B subunit 5 general transcription and DNA repair factor IIH subunit TFB5
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 3
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00020 Citrate cycle (TCA cycle) 3
ath00190 Oxidative phosphorylation 3
ath01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 5
ghi04142 Lysosome 2
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04142 Lysosome 2
ghi00190 Oxidative phosphorylation 2
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03050 Proteasome 2
gma03420 Nucleotide excision repair 2
gma00190 Oxidative phosphorylation 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
mtr03022 Basal transcription factors 2
mtr03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03022 Basal transcription factors 2
mtr03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00190 Oxidative phosphorylation 2
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 9
osa03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03022 Basal transcription factors 2
hvu03420 Nucleotide excision repair 2
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03060 Protein export 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106445585 837795 107936378 107946966 102612060 100785713 18094417 11411289 11406059 102604697 4338052 4343686 100281631 123179906 123104723 123071586 123439544 8068656 104581277
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