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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   111214043   regulator of nonsense transcripts UPF2 
 bna-r.1   106438093   regulator of nonsense transcripts UPF2 
 bra-r.6   103857854   regulator of nonsense transcripts UPF2 
 ath-u.5   AT2G39260   regulator of nonsense transcripts UPF2 
 ghi-r.1   107891167   regulator of nonsense transcripts UPF2-like 
 ghi-r.1   107940875   regulator of nonsense transcripts UPF2 
 cit-r.1   102617412   regulator of nonsense transcripts UPF2 
 gma-u.5   100795746   regulator of nonsense transcripts UPF2 
 gma-u.5   100786092   regulator of nonsense transcripts UPF2 
 vvi-u.5   100258101   regulator of nonsense transcripts UPF2 
 ppo-u.5   7469776   regulator of nonsense transcripts UPF2 
 ppo-u.5   7458633   regulator of nonsense transcripts UPF2 
 mtr-u.5   11422854   regulator of nonsense transcripts UPF2 
 sly-u.5   101253276   regulator of nonsense transcripts UPF2 
 sot-r.1   102580674   regulator of nonsense transcripts UPF2 
 nta-r.1   107832518   regulator of nonsense transcripts UPF2 
 nta-r.1   107766367   regulator of nonsense transcripts UPF2 
 osa-u.5   4330058   regulator of nonsense transcripts UPF2 
 zma-u.5   103627442   regulator of nonsense transcripts UPF2 
 zma-u.5   100194141   uncharacterized LOC100194141 
 tae-r.2   123053966   regulator of nonsense transcripts UPF2 
 tae-r.2   123127702   regulator of nonsense transcripts UPF2 
 tae-r.2   123137553   regulator of nonsense transcripts UPF2 
 hvu-r.1   123404355   regulator of nonsense transcripts UPF2 
 hvu-r.1   123427274   regulator of nonsense transcripts UPF2-like 
 sbi-r.1   8074783   regulator of nonsense transcripts UPF2 
 bdi-r.1   100845822   regulator of nonsense transcripts UPF2 
 bdi-r.1   100824868   regulator of nonsense transcripts UPF2 
 cre-r.1   CHLRE_17g729250v5   uncharacterized protein 
 cre-r.1   CHLRE_17g729393v5   uncharacterized protein 

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Top 50 coexpressed genes to 111214043 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 111214043 (bna-r.1 coexpression data)

CoexMap"111214043"


bnaLOC111214043 | Entrez gene ID : 111214043    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 2 1 2 1 2 1 1 1 2 1 2 3 2 1 2 2
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03013 [list] [network] Nucleocytoplasmic transport (328 genes)
bna03015 [list] [network] mRNA surveillance pathway (420 genes)
GO BP
GO:0000184 [list] [network] nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  (41 genes)  IEA  
GO CC
GO:0035145 [list] [network] exon-exon junction complex  (23 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (16489 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (3852 genes)  IEA  
GO:0005515 [list] [network] protein binding  (12789 genes)  IEA  
Protein XP_048631713.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto 4  (predict for XP_048631713.1)
Subcellular
localization
TargetP
other 9,  chlo 3  (predict for XP_048631713.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
111214043
bna-r.1
for
106438093
bra-r.6
for
103857854
ath-u.5
for
AT2G39260
ghi-r.1
for
107891167
ghi-r.1
for
107940875
cit-r.1
for
102617412
gma-u.5
for
100795746
gma-u.5
for
100786092
vvi-u.5
for
100258101
ppo-u.5
for
7469776
ppo-u.5
for
7458633
mtr-u.5
for
11422854
sly-u.5
for
101253276
sot-r.1
for
102580674
nta-r.1
for
107832518
nta-r.1
for
107766367
osa-u.5
for
4330058
zma-u.5
for
103627442
zma-u.5
for
100194141
tae-r.2
for
123053966
tae-r.2
for
123127702
tae-r.2
for
123137553
hvu-r.1
for
123404355
hvu-r.1
for
123427274
sbi-r.1
for
8074783
bdi-r.1
for
100845822
bdi-r.1
for
100824868
cre-r.1
for
CHLRE_17g729250v5
cre-r.1
for
CHLRE_17g729393v5


Ortholog ID: 6838
Species bna bna bra ath ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma zma tae tae tae hvu hvu sbi bdi bdi cre cre
Symbol LOC111214043 LOC106438093 LOC103857854 AT2G39260 LOC107891167 LOC107940875 LOC102617412 LOC100795746 LOC100786092 LOC100258101 LOC7469776 LOC7458633 LOC11422854 LOC101253276 LOC102580674 LOC107832518 LOC107766367 LOC4330058 LOC103627442 LOC100194141 LOC123053966 LOC123137553 LOC123189860 LOC123404355 LOC123427274 LOC8074783 LOC100845822 LOC100824868 CHLRE_17g729250v5 CHLRE_17g729393v5
Function* regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2-like regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 uncharacterized LOC100194141 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2-like regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
bna03082 ATP-dependent chromatin remodeling 5
bna03013 Nucleocytoplasmic transport 4
bna03015 mRNA surveillance pathway 3
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
bna03082 ATP-dependent chromatin remodeling 5
bna03013 Nucleocytoplasmic transport 4
bna03015 mRNA surveillance pathway 3
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03083 Polycomb repressive complex 2
ath04120 Ubiquitin mediated proteolysis 2
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03040 Spliceosome 3
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03040 Spliceosome 3
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
cit03022 Basal transcription factors 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
gma03015 mRNA surveillance pathway 2
gma03022 Basal transcription factors 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
gma03015 mRNA surveillance pathway 2
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03013 Nucleocytoplasmic transport 3
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 7
ppo03013 Nucleocytoplasmic transport 4
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 3
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 3
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 3
nta03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00310 Lysine degradation 2
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03013 Nucleocytoplasmic transport 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 4
tae03015 mRNA surveillance pathway 4
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
tae03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
hvu03013 Nucleocytoplasmic transport 2
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 4
sbi03040 Spliceosome 3
sbi03082 ATP-dependent chromatin remodeling 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 4
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03015 mRNA surveillance pathway 4
bdi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 7
cre03020 RNA polymerase 2
cre03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 111214043 106438093 103857854 818511 107891167 107940875 102617412 100795746 100786092 100258101 7469776 7458633 11422854 101253276 102580674 107832518 107766367 4330058 103627442 100194141 123053966 123137553 123189860 123404355 123427274 8074783 100845822 100824868 5722841 66057066
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