ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	112325363	uncharacterized LOC112325363
ppo-r.4	112325363	uncharacterized LOC112325363
ppo-u.5	18108015	uncharacterized LOC18108015
gma-u.5	102668468	uncharacterized LOC102668468
gma-u.5	102661134	uncharacterized LOC102661134
mtr-u.5	11420708	uncharacterized LOC11420708
ath-u.5	AT5G09840	Putative endonuclease or glycosyl hydrolase
ath-u.5	AT5G64710	Putative endonuclease or glycosyl hydrolase
bra-r.6	103846858	uncharacterized LOC103846858
bra-r.6	103855253	uncharacterized LOC103855253
vvi-u.5	100259153	uncharacterized LOC100259153
ghi-r.1	107956597	uncharacterized LOC107956597
ghi-r.1	107910807	uncharacterized LOC107910807
ghi-r.1	107911485	uncharacterized LOC107911485
bna-r.1	125588839	uncharacterized LOC125588839
bna-r.1	106382838	uncharacterized LOC106382838
bna-r.1	BNAA02G34330D	uncharacterized BNAA02G34330D
cit-r.1	102616418	uncharacterized LOC102616418
sly-u.5	101261569	uncharacterized LOC101261569
sot-r.1	102596006	uncharacterized LOC102596006
nta-r.1	107807451	uncharacterized LOC107807451
nta-r.1	107776551	uncharacterized LOC107776551
osa-u.5	4349873	probable GPI-anchored adhesin-like protein PGA55
osa-u.5	4351578	uncharacterized LOC4351578
zma-u.5	100273919	uncharacterized LOC100273919
zma-u.5	103654637	Putative endonuclease or glycosyl hydrolase
tae-r.2	123111110	uncharacterized LOC123111110
tae-r.2	123102952	uncharacterized LOC123102952
tae-r.2	123086594	uncharacterized LOC123086594
hvu-r.1	123409964	uncharacterized LOC123409964
hvu-r.1	123447989	uncharacterized LOC123447989
sbi-r.1	8073605	uncharacterized LOC8073605
sbi-r.1	8079858	uncharacterized LOC8079858
bdi-r.1	100834665	uncharacterized LOC100834665
bdi-r.1	104585057	uncharacterized LOC104585057

Top 50 coexpressed genes to 112325363 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 112325363 (ppo-u.5 coexpression data)

CoexMap"112325363"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0010468 [list] [network] regulation of gene expression

(2323 genes)

IEA

GO CC

GO:0005777 [list] [network] peroxisome

(105 genes)

IEA

GO MF

GO:0004540 [list] [network] RNA nuclease activity

(164 genes)

IEA

Protein

XP_024447592.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 7, nucl 2

(predict for XP_024447592.2)

Subcellular
localization
TargetP

chlo 8

(predict for XP_024447592.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 112325363	ppo-r.4 for 112325363	ppo-u.5 for 18108015	gma-u.5 for 102668468	gma-u.5 for 102661134	mtr-u.5 for 11420708	ath-u.5 for AT5G09840	ath-u.5 for AT5G64710	bra-r.6 for 103846858	bra-r.6 for 103855253	vvi-u.5 for 100259153	ghi-r.1 for 107956597	ghi-r.1 for 107910807	ghi-r.1 for 107911485	bna-r.1 for 125588839	bna-r.1 for 106382838	bna-r.1 for BNAA02G34330D	cit-r.1 for 102616418	sly-u.5 for 101261569	sot-r.1 for 102596006	nta-r.1 for 107807451	nta-r.1 for 107776551	osa-u.5 for 4349873	osa-u.5 for 4351578	zma-u.5 for 100273919	zma-u.5 for 103654637	tae-r.2 for 123111110	tae-r.2 for 123102952	tae-r.2 for 123086594	hvu-r.1 for 123409964	hvu-r.1 for 123447989	sbi-r.1 for 8073605	sbi-r.1 for 8079858	bdi-r.1 for 100834665	bdi-r.1 for 104585057

Ortholog

Ortholog ID: 4608

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized LOC112325363

uncharacterized LOC18108015

uncharacterized LOC102661134

uncharacterized LOC102660946

uncharacterized LOC11420708

Putative endonuclease or glycosyl hydrolase

uncharacterized LOC103846858

uncharacterized LOC103855253

uncharacterized LOC100259153

uncharacterized LOC107956597

uncharacterized LOC107910807

uncharacterized LOC107911485

uncharacterized LOC125588839

uncharacterized LOC106419069

uncharacterized LOC106426705

uncharacterized LOC102616418

uncharacterized LOC101261569

uncharacterized LOC102596006

uncharacterized LOC107807451

uncharacterized LOC107776551

probable GPI-anchored adhesin-like protein PGA55

uncharacterized LOC4351578

uncharacterized LOC100273919

Putative endonuclease or glycosyl hydrolase

uncharacterized LOC123111110

uncharacterized LOC123086594

uncharacterized LOC123096415

uncharacterized LOC123409964

uncharacterized LOC123447989

uncharacterized LOC8073605

uncharacterized LOC8079858

uncharacterized LOC100834665

uncharacterized LOC104585057

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	3
gma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	3
mtr03018	RNA degradation	2
mtr03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	2
bna00190	Oxidative phosphorylation	2
bna00860	Porphyrin metabolism	2
bna01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	4
cit03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	2
nta00190	Oxidative phosphorylation	2
nta00860	Porphyrin metabolism	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	4
nta00190	Oxidative phosphorylation	2
nta00860	Porphyrin metabolism	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	2
zma03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	2
tae03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	3
hvu03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03020	RNA polymerase	2
hvu03013	Nucleocytoplasmic transport	2
hvu03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03020	RNA polymerase	3

Expression

Expression pattern

Entrez Gene ID^*

112325363

18108015

102661134

102660946

11420708

830844

836592

103846858

103855253

100259153

107956597

107910807

107911485

125588839

106419069

106426705

102616418

101261569

102596006

107807451

107776551

4349873

4351578

100273919

103654637

123111110

123086594

123096415

123409964

123447989

8073605

8079858

100834665

104585057

The preparation time of this page was 2.8 [sec].


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	2	1	2	2	1	3	3	1	1	1	2	2	2	3	2	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 112325363 (ppo-u.5 coexpression data)

Top 50 enrichment test to 112325363 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**