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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   112417546   homeobox-DDT domain protein RLT3 
 mtr-r.5   112417546   homeobox-DDT domain protein RLT3 
 gma-u.5   100802783   homeobox-DDT domain protein RLT3 
 gma-u.5   100792062   homeobox-DDT domain protein RLT3 
 ppo-u.5   7456034   homeobox-DDT domain protein RLT3 
 ath-u.5   AT4G12750   Homeodomain-like transcriptional regulator 
 vvi-u.5   100241125   homeobox-DDT domain protein RLT3 
 sly-u.5   101266687   homeobox-DDT domain protein RLT3 
 osa-u.5   4343927   homeobox-DDT domain protein RLT3 
 zma-u.5   103644204   homeobox-DDT domain protein RLT3 

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Top 50 coexpressed genes to 112417546 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 112417546 (mtr-u.5 coexpression data)

CoexMap"112417546"


mtrLOC112417546 | Entrez gene ID : 112417546    
Species mtr gma ppo ath vvi sly osa zma hvu sot tae nta bra cit ghi bna bdi sbi cre
Paralog 2 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (425 genes)  IEA  
GO CC
GO MF
Protein XP_024629584.1 [sequence] [blastp]
XP_024629585.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto 2,  cysk 2  (predict for XP_024629584.1)
nucl 4,  cyto 2,  cysk 2,  nucl_plas 2  (predict for XP_024629585.1)
Subcellular
localization
TargetP
mito 5,  other 4  (predict for XP_024629584.1)
mito 5,  other 4  (predict for XP_024629585.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
112417546

.
mtr-r.5
for
112417546

.
gma-u.5
for
100802783

.
gma-u.5
for
100792062

.
ppo-u.5
for
7456034

.
ath-u.5
for
AT4G12750

.
vvi-u.5
for
100241125

.
sly-u.5
for
101266687

.
osa-u.5
for
4343927

.
zma-u.5
for
103644204

.


Ortholog ID: 8532
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AT4G12750 LOC100802783 LOC100792062 LOC101266687 LOC4343927 LOC103644204 LOC103832849 LOC100241125 LOC7456034 LOC112417546 LOC123068944 LOC123077478 LOC123424846 LOC123442934 LOC107912490 LOC107923916 LOC106427465 LOC106360500 LOC8061133 LOC102601165 LOC102620965 LOC100825161 LOC107766955 LOC107793383
Function* Homeodomain-like transcriptional regulator homeobox-DDT domain protein RLT3 homeobox-DDT domain protein RLT3 homeobox-DDT domain protein RLT3 homeobox-DDT domain protein RLT3 homeobox-DDT domain protein RLT3 homeobox-DDT domain protein RLT3 homeobox-DDT domain protein RLT3 homeobox-DDT domain protein RLT3 homeobox-DDT domain protein RLT3 homeobox-DDT domain protein RLT3 homeobox-DDT domain protein RLT3 homeobox-DDT domain protein RLT3-like homeobox-DDT domain protein RLT3-like homeobox-DDT domain protein RLT3 homeobox-DDT domain protein RLT3 homeobox-DDT domain protein RLT3-like homeobox-DDT domain protein RLT3 homeobox-DDT domain protein RLT3 uncharacterized LOC102601165 homeobox-DDT domain protein RLT3 homeobox-DDT domain protein RLT3 homeobox-DDT domain protein RLT3 homeobox-DDT domain protein RLT3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 2
ghi00270 Cysteine and methionine metabolism 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 2
ghi00270 Cysteine and methionine metabolism 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 826887 100802783 100792062 101266687 4343927 103644204 103832849 100241125 7456034 112417546 123068944 123077478 123424846 123442934 107912490 107923916 106427465 106360500 8061133 102601165 102620965 100825161 107766955 107793383
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