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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   112419688   probable CCR4-associated factor 1 homolog 11 
 mtr-r.5   112419688   probable CCR4-associated factor 1 homolog 11 
 mtr-u.5   112417480   probable CCR4-associated factor 1 homolog 11 
 mtr-u.5   112419659   probable CCR4-associated factor 1 homolog 11 
 mtr-u.5   112416242   probable CCR4-associated factor 1 homolog 11 
 gma-u.5   100817875   CCR4 associated factor 1-related protein 
 gma-u.5   100811298   probable CCR4-associated factor 1 homolog 11 
 gma-u.5   100805583   probable CCR4-associated factor 1 homolog 11 
 ppo-u.5   18102215   probable CCR4-associated factor 1 homolog 9 
 ppo-u.5   18098097   probable CCR4-associated factor 1 homolog 11 
 ppo-u.5   7485296   probable CCR4-associated factor 1 homolog 11 
 ath-u.5   CAF1a   Polynucleotidyl transferase, ribonuclease H-like superfamily protein 
 ath-u.5   CAF1b   Polynucleotidyl transferase, ribonuclease H-like superfamily protein 
 bra-r.6   103856505   probable CCR4-associated factor 1 homolog 11 
 bra-r.6   103845561   probable CCR4-associated factor 1 homolog 11 
 bra-r.6   103851429   probable CCR4-associated factor 1 homolog 11 
 vvi-u.5   100253485   probable CCR4-associated factor 1 homolog 9 
 vvi-u.5   100249306   probable CCR4-associated factor 1 homolog 9 
 ghi-r.1   107889193   probable CCR4-associated factor 1 homolog 9 
 ghi-r.1   107954120   probable CCR4-associated factor 1 homolog 9 
 ghi-r.1   107951705   probable CCR4-associated factor 1 homolog 11 
 bna-r.1   106438373   probable CCR4-associated factor 1 homolog 11 
 bna-r.1   106419568   probable CCR4-associated factor 1 homolog 11 
 bna-r.1   106384754   probable CCR4-associated factor 1 homolog 11 
 cit-r.1   102614741   probable CCR4-associated factor 1 homolog 11 
 cit-r.1   102630158   probable CCR4-associated factor 1 homolog 11 
 sly-u.5   101258270   probable CCR4-associated factor 1 homolog 9 
 sly-u.5   101268737   probable CCR4-associated factor 1 homolog 11 
 sot-r.1   102594631   probable CCR4-associated factor 1 homolog 11 
 sot-r.1   102578270   probable CCR4-associated factor 1 homolog 9 
 nta-r.1   107828869   putative CCR4-associated factor 1 homolog 9 
 nta-r.1   107760653   putative CCR4-associated factor 1 homolog 11 
 nta-r.1   107793015   probable CCR4-associated factor 1 homolog 11 
 osa-u.5   4337457   probable CCR4-associated factor 1 homolog 11 
 zma-u.5   100193751   uncharacterized LOC100193751 
 zma-u.5   103642973   probable CCR4-associated factor 1 homolog 11 
 tae-r.2   123055286   probable CCR4-associated factor 1 homolog 11 
 tae-r.2   123191113   probable CCR4-associated factor 1 homolog 11 
 tae-r.2   123047493   probable CCR4-associated factor 1 homolog 11 
 hvu-r.1   123431274   probable CCR4-associated factor 1 homolog 11 
 sbi-r.1   8076496   probable CCR4-associated factor 1 homolog 11 
 bdi-r.1   100821768   probable CCR4-associated factor 1 homolog 11 

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Top 50 coexpressed genes to 112419688 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 112419688 (mtr-u.5 coexpression data)

CoexMap"112419688"


mtrLOC112419688 | Entrez gene ID : 112419688    
Species mtr gma ppo ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 5 3 3 2 3 2 3 3 2 2 2 3 1 2 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0030014 [list] [network] CCR4-NOT complex  (29 genes)  IEA  
GO MF
GO:0004535 [list] [network] poly(A)-specific ribonuclease activity  (10 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (4267 genes)  IEA  
Protein XP_024633363.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 3,  chlo_mito 3,  mito 2  (predict for XP_024633363.1)
Subcellular
localization
TargetP
chlo 3  (predict for XP_024633363.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
112419688
mtr-r.5
for
112419688
mtr-u.5
for
112417480
mtr-u.5
for
112419659
mtr-u.5
for
112416242
gma-u.5
for
100817875
gma-u.5
for
100811298
gma-u.5
for
100805583
ppo-u.5
for
18102215
ppo-u.5
for
18098097
ppo-u.5
for
7485296
ath-u.5
for
CAF1a
ath-u.5
for
CAF1b
bra-r.6
for
103856505
bra-r.6
for
103845561
bra-r.6
for
103851429
vvi-u.5
for
100253485
vvi-u.5
for
100249306
ghi-r.1
for
107889193
ghi-r.1
for
107954120
ghi-r.1
for
107951705
bna-r.1
for
106438373
bna-r.1
for
106419568
bna-r.1
for
106384754
cit-r.1
for
102614741
cit-r.1
for
102630158
sly-u.5
for
101258270
sly-u.5
for
101268737
sot-r.1
for
102594631
sot-r.1
for
102578270
nta-r.1
for
107828869
nta-r.1
for
107760653
nta-r.1
for
107793015
osa-u.5
for
4337457
zma-u.5
for
100193751
zma-u.5
for
103642973
tae-r.2
for
123055286
tae-r.2
for
123191113
tae-r.2
for
123047493
hvu-r.1
for
123431274
sbi-r.1
for
8076496
bdi-r.1
for
100821768


Ortholog ID: 2912
Species mtr mtr mtr gma gma gma ppo ppo ppo ath ath bra bra bra vvi vvi ghi ghi ghi bna bna bna cit cit sly sly sot sot nta nta nta osa zma zma tae tae tae hvu sbi bdi
Symbol LOC112419688 LOC112419659 LOC112417479 LOC100811298 LOC100790027 LOC100500357 LOC18098097 LOC7485296 LOC7469961 CAF1a CAF1b LOC103856505 LOC103851429 LOC103848067 LOC100253485 LOC100249306 LOC107889193 LOC107951705 LOC107891568 LOC106419568 LOC106386952 LOC106371662 LOC102614741 LOC102630158 LOC101258270 LOC101268737 LOC102594631 LOC102578270 LOC107760653 LOC107793015 LOC107815219 LOC4337457 LOC100193751 LOC103642973 LOC123055286 LOC123191113 LOC123047493 LOC123431274 LOC8076496 LOC100821768
Function* probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 9 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 11 Polynucleotidyl transferase, ribonuclease H-like superfamily protein Polynucleotidyl transferase, ribonuclease H-like superfamily protein probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 9 probable CCR4-associated factor 1 homolog 9 probable CCR4-associated factor 1 homolog 9 probable CCR4-associated factor 1 homolog 9 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 9 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 9 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 9 putative CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 11 putative CCR4-associated factor 1 homolog 9 probable CCR4-associated factor 1 homolog 11 uncharacterized LOC100193751 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 11
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 4
gma00230 Purine metabolism 3
gma00030 Pentose phosphate pathway 2
gma01200 Carbon metabolism 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04016 MAPK signaling pathway - plant 2
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04016 MAPK signaling pathway - plant 2
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 3
ghi04141 Protein processing in endoplasmic reticulum 3
ghi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04016 MAPK signaling pathway - plant 2
sly04075 Plant hormone signal transduction 2
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 4
nta04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04016 MAPK signaling pathway - plant 4
zma04626 Plant-pathogen interaction 4
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
tae04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04626 Plant-pathogen interaction 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 112419688 112419659 112417479 100811298 100790027 100500357 18098097 7485296 7469961 823551 832285 103856505 103851429 103848067 100253485 100249306 107889193 107951705 107891568 106419568 106386952 106371662 102614741 102630158 101258270 101268737 102594631 102578270 107760653 107793015 107815219 4337457 100193751 103642973 123055286 123191113 123047493 123431274 8076496 100821768
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