ATTED-II : GeneCoexpression result

Species	Gene	Description
mtr-u.5	112422480	uncharacterized LOC112422480
mtr-r.5	112422480	uncharacterized LOC112422480
mtr-u.5	112416313	uncharacterized LOC112416313
mtr-u.5	112419059	uncharacterized LOC112419059
gma-u.5	100809644	uncharacterized LOC100809644
gma-u.5	100796237	uncharacterized protein Mb2253c
gma-u.5	100779114	uncharacterized LOC100779114
ppo-u.5	7472561	uncharacterized LOC7472561
ppo-u.5	7462616	uncharacterized LOC7462616
ppo-u.5	7471483	uncharacterized LOC7471483
ath-u.5	AT3G01410	Polynucleotidyl transferase, ribonuclease H-like superfamily protein
ath-u.5	AT5G51080	RNase H family protein
ath-u.5	AT1G24090	RNase H family protein
vvi-u.5	100255243	uncharacterized LOC100255243
vvi-u.5	100242330	uncharacterized LOC100242330
sly-u.5	101260715	uncharacterized LOC101260715
sly-u.5	101251089	uncharacterized LOC101251089
sly-u.5	101055521	Hop-interacting protein THI034
osa-u.5	9268720	uncharacterized LOC9268720
osa-u.5	4348807	uncharacterized LOC4348807
zma-u.5	100191864	uncharacterized LOC100191864
zma-u.5	100274104	putative rnase H family protein
zma-u.5	100278534	uncharacterized LOC100278534

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0004523 [list] [network] RNA-DNA hybrid ribonuclease activity	(348 genes)	IEA
GO:0003676 [list] [network] nucleic acid binding	(4267 genes)	IEA

Protein

XP_024641189.1 [sequence] [blastp]
XP_024641190.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 3, nucl 3, cyto 3, cyto_nucl 3	(predict for XP_024641189.1)
chlo 3, nucl 3, cyto 3, cyto_nucl 3	(predict for XP_024641190.1)

Subcellular
localization
TargetP

other 8	(predict for XP_024641189.1)
other 8	(predict for XP_024641190.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 112422480	mtr-r.5 for 112422480	mtr-u.5 for 112416313	mtr-u.5 for 112419059	gma-u.5 for 100809644	gma-u.5 for 100796237	gma-u.5 for 100779114	ppo-u.5 for 7472561	ppo-u.5 for 7462616	ppo-u.5 for 7471483	ath-u.5 for AT3G01410	ath-u.5 for AT5G51080	ath-u.5 for AT1G24090	vvi-u.5 for 100255243	vvi-u.5 for 100242330	sly-u.5 for 101260715	sly-u.5 for 101251089	sly-u.5 for 101055521	osa-u.5 for 9268720	osa-u.5 for 4348807	zma-u.5 for 100191864	zma-u.5 for 100274104	zma-u.5 for 100278534

Ortholog

Ortholog ID: 1315

Species

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized protein Mb2253c

uncharacterized LOC100779114

uncharacterized LOC7471483

uncharacterized LOC7472561

Polynucleotidyl transferase, ribonuclease H-like superfamily protein

RNase H family protein

uncharacterized LOC103850071

uncharacterized protein Mb2253c-like

uncharacterized LOC100255243

uncharacterized LOC100242330

uncharacterized LOC107922695

uncharacterized LOC107886670

uncharacterized LOC106367589

uncharacterized LOC106433426

uncharacterized LOC102607166

uncharacterized LOC102614852

uncharacterized LOC101251089

Hop-interacting protein THI034

uncharacterized protein YpeP

uncharacterized LOC102591820

uncharacterized LOC107789608

uncharacterized LOC107793196

uncharacterized LOC4348807

uncharacterized LOC9268720

uncharacterized LOC100278534

uncharacterized LOC100191864

uncharacterized LOC123119697

uncharacterized LOC123166302

uncharacterized LOC123398451

uncharacterized LOC123430249

uncharacterized LOC8054818

uncharacterized LOC100841248

uncharacterized LOC100831320

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
gma01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00280	Valine, leucine and isoleucine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04814	Motor proteins	2
ath03013	Nucleocytoplasmic transport	2
ath04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00220	Arginine biosynthesis	2
ghi00250	Alanine, aspartate and glutamate metabolism	2
ghi00270	Cysteine and methionine metabolism	2
ghi00330	Arginine and proline metabolism	2
ghi00350	Tyrosine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04146	Peroxisome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00190	Oxidative phosphorylation	3
bna00860	Porphyrin metabolism	3
bna01240	Biosynthesis of cofactors	3
bna03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00230	Purine metabolism	2
cit00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00540	Lipopolysaccharide biosynthesis	3
nta03460	Fanconi anemia pathway	2
nta03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03020	RNA polymerase	2
nta03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03015	mRNA surveillance pathway	2
osa03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2
sbi01230	Biosynthesis of amino acids	2
sbi00061	Fatty acid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03420	Nucleotide excision repair	3
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	7

Expression

Expression pattern

Entrez Gene ID^*

100796237

100779114

7471483

7472561

821319

839020

103850071

103858522

100255243

100242330

107922695

107886670

106367589

106433426

102607166

102614852

101251089

101055521

102582559

102591820

107789608

107793196

4348807

9268720

100278534

100191864

123119697

123166302

123398451

123430249

8054818

100841248

100831320

66053656

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 112422480 (mtr-u.5 coexpression data)

Top 50 enrichment test to 112422480 (mtr-u.5 coexpression data)


Species	mtr	gma	ppo	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	4	3	3	3	2	3	2	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 112422480 (mtr-u.5 coexpression data)

Top 50 enrichment test to 112422480 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**