ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	7471483	uncharacterized LOC7471483
ppo-r.4	7471483	uncharacterized LOC7471483
ppo-u.5	7462616	uncharacterized LOC7462616
ppo-u.5	7472561	uncharacterized LOC7472561
gma-u.5	100796237	uncharacterized protein Mb2253c
gma-u.5	100809644	uncharacterized LOC100809644
gma-u.5	100779114	uncharacterized LOC100779114
ath-u.5	AT3G01410	Polynucleotidyl transferase, ribonuclease H-like superfamily protein
ath-u.5	AT5G51080	RNase H family protein
ath-u.5	AT1G24090	RNase H family protein
bra-r.6	103840714	uncharacterized LOC103840714
bra-r.6	103850071	uncharacterized LOC103850071
bra-r.6	103858522	uncharacterized protein Mb2253c-like
vvi-u.5	100255243	uncharacterized LOC100255243
vvi-u.5	100242330	uncharacterized LOC100242330
ghi-r.1	107909624	uncharacterized LOC107909624
ghi-r.1	107905444	uncharacterized LOC107905444
ghi-r.1	107903891	uncharacterized LOC107903891
bna-r.1	111202977	uncharacterized LOC111202977
bna-r.1	106433426	uncharacterized LOC106433426
bna-r.1	106388665	uncharacterized protein Mb2253c
cit-r.1	102614852	uncharacterized LOC102614852
cit-r.1	102607166	uncharacterized LOC102607166
sly-u.5	101251089	uncharacterized LOC101251089
sly-u.5	101055521	Hop-interacting protein THI034
sly-u.5	101245603	uncharacterized LOC101245603
sot-r.1	102591820	uncharacterized LOC102591820
sot-r.1	102591092	uncharacterized LOC102591092
sot-r.1	102582559	uncharacterized protein YpeP
nta-r.1	107784424	uncharacterized LOC107784424
nta-r.1	107789608	uncharacterized LOC107789608
nta-r.1	107828087	uncharacterized LOC107828087
osa-u.5	9268720	uncharacterized LOC9268720
osa-u.5	4348807	uncharacterized LOC4348807
zma-u.5	100191864	uncharacterized LOC100191864
zma-u.5	100278534	uncharacterized LOC100278534
zma-u.5	100274104	putative rnase H family protein
tae-r.2	123083483	uncharacterized LOC123083483
tae-r.2	123180966	uncharacterized LOC123180966
tae-r.2	123150002	uncharacterized LOC123150002
hvu-r.1	123430249	uncharacterized LOC123430249
hvu-r.1	123411324	uncharacterized LOC123411324
hvu-r.1	123398451	uncharacterized LOC123398451
sbi-r.1	110431618	uncharacterized LOC110431618
sbi-r.1	110435482	uncharacterized protein Mb2253c-like
sbi-r.1	8054818	uncharacterized LOC8054818
bdi-r.1	100831320	uncharacterized LOC100831320
bdi-r.1	100841248	uncharacterized LOC100841248
bdi-r.1	100824410	uncharacterized LOC100824410
cre-r.1	CHLRE_06g272550v5	uncharacterized protein

Top 50 coexpressed genes to 7471483 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 7471483 (ppo-u.5 coexpression data)

CoexMap"7471483"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0004523 [list] [network] RNA-DNA hybrid ribonuclease activity	(65 genes)	IEA
GO:0003676 [list] [network] nucleic acid binding	(4002 genes)	IEA

Protein

XP_024463047.2 [sequence] [blastp]
XP_024463048.2 [sequence] [blastp]
XP_024463049.2 [sequence] [blastp]
XP_024463050.2 [sequence] [blastp]
XP_052311190.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, mito 2, cyto_mito 1	(predict for XP_024463047.2)
chlo 6, mito 2, cyto_mito 1	(predict for XP_024463048.2)
chlo 6, mito 2, cyto_mito 1	(predict for XP_024463049.2)
chlo 6, mito 2, nucl 1, cysk 1, cysk_nucl 1	(predict for XP_024463050.2)
nucl 4, cyto 4, cyto_nucl 4	(predict for XP_052311190.1)

Subcellular
localization
TargetP

mito 7, chlo 6	(predict for XP_024463047.2)
mito 7, chlo 6	(predict for XP_024463048.2)
mito 7, chlo 6	(predict for XP_024463049.2)
mito 7, chlo 6	(predict for XP_024463050.2)
other 9	(predict for XP_052311190.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7471483	ppo-r.4 for 7471483	ppo-u.5 for 7462616	ppo-u.5 for 7472561	gma-u.5 for 100796237	gma-u.5 for 100809644	gma-u.5 for 100779114	ath-u.5 for AT3G01410	ath-u.5 for AT5G51080	ath-u.5 for AT1G24090	bra-r.6 for 103840714	bra-r.6 for 103850071	bra-r.6 for 103858522	vvi-u.5 for 100255243	vvi-u.5 for 100242330	ghi-r.1 for 107909624	ghi-r.1 for 107905444	ghi-r.1 for 107903891	bna-r.1 for 111202977	bna-r.1 for 106433426	bna-r.1 for 106388665	cit-r.1 for 102614852	cit-r.1 for 102607166	sly-u.5 for 101251089	sly-u.5 for 101055521	sly-u.5 for 101245603	sot-r.1 for 102591820	sot-r.1 for 102591092	sot-r.1 for 102582559	nta-r.1 for 107784424	nta-r.1 for 107789608	nta-r.1 for 107828087	osa-u.5 for 9268720	osa-u.5 for 4348807	zma-u.5 for 100191864	zma-u.5 for 100278534	zma-u.5 for 100274104	tae-r.2 for 123083483	tae-r.2 for 123180966	tae-r.2 for 123150002	hvu-r.1 for 123430249	hvu-r.1 for 123411324	hvu-r.1 for 123398451	sbi-r.1 for 110431618	sbi-r.1 for 110435482	sbi-r.1 for 8054818	bdi-r.1 for 100831320	bdi-r.1 for 100841248	bdi-r.1 for 100824410	cre-r.1 for CHLRE_06g272550v5

Ortholog

Ortholog ID: 1315

Species

ppo

gma

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC7471483

uncharacterized LOC7462616

uncharacterized LOC7472561

uncharacterized protein Mb2253c

uncharacterized LOC100809644

uncharacterized LOC100779114

Polynucleotidyl transferase, ribonuclease H-like superfamily protein

RNase H family protein

uncharacterized LOC103840714

uncharacterized LOC103850071

uncharacterized protein Mb2253c-like

uncharacterized LOC100255243

uncharacterized LOC100242330

uncharacterized LOC107903891

uncharacterized LOC107886670

uncharacterized LOC107922695

uncharacterized LOC111202977

uncharacterized LOC106433426

uncharacterized LOC106367589

uncharacterized LOC102614852

uncharacterized LOC102607166

uncharacterized LOC101251089

Hop-interacting protein THI034

uncharacterized LOC101248411

uncharacterized LOC102591820

uncharacterized LOC102591092

uncharacterized protein YpeP

uncharacterized LOC107789608

uncharacterized LOC107793196

uncharacterized LOC107794286

uncharacterized LOC9268720

uncharacterized LOC4348807

uncharacterized LOC100191864

uncharacterized LOC100278534

putative rnase H family protein

uncharacterized LOC123107684

uncharacterized LOC123119697

uncharacterized LOC123166302

uncharacterized LOC123430249

uncharacterized LOC123411324

uncharacterized LOC123398451

uncharacterized LOC110431618

uncharacterized LOC8054818

uncharacterized LOC100831320

uncharacterized LOC100841248

uncharacterized LOC100824410

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	4
ppo03083	Polycomb repressive complex	2
ppo04120	Ubiquitin mediated proteolysis	2
ppo04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00280	Valine, leucine and isoleucine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
gma01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04814	Motor proteins	2
ath03013	Nucleocytoplasmic transport	2
ath04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03082	ATP-dependent chromatin remodeling	2
ath04145	Phagosome	2
ath04148	Efferocytosis	2
ath04517	IgSF CAM signaling	2
ath04518	Integrin signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04146	Peroxisome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04146	Peroxisome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00220	Arginine biosynthesis	2
ghi00250	Alanine, aspartate and glutamate metabolism	2
ghi00270	Cysteine and methionine metabolism	2
ghi00330	Arginine and proline metabolism	2
ghi00350	Tyrosine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00230	Purine metabolism	7
bna00250	Alanine, aspartate and glutamate metabolism	7
bna01232	Nucleotide metabolism	7
bna01240	Biosynthesis of cofactors	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00190	Oxidative phosphorylation	3
bna00860	Porphyrin metabolism	3
bna01240	Biosynthesis of cofactors	3
bna03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00230	Purine metabolism	2
cit00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00540	Lipopolysaccharide biosynthesis	3
nta03460	Fanconi anemia pathway	2
nta03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03020	RNA polymerase	2
nta03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03015	mRNA surveillance pathway	2
osa03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2
sbi01230	Biosynthesis of amino acids	2
sbi00061	Fatty acid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03420	Nucleotide excision repair	3
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	3
bdi03013	Nucleocytoplasmic transport	2
bdi03015	mRNA surveillance pathway	2
bdi03018	RNA degradation	2
bdi03022	Basal transcription factors	2

Expression

Expression pattern

Entrez Gene ID^*

7471483

7462616

7472561

100796237

100809644

100779114

821319

835181

839020

103840714

103850071

103858522

100255243

100242330

107903891

107886670

107922695

111202977

106433426

106367589

102614852

102607166

101251089

101055521

101248411

102591820

102591092

102582559

107789608

107793196

107794286

9268720

4348807

100191864

100278534

100274104

123107684

123119697

123166302

123430249

123411324

123398451

110431618

8054818

100831320

100841248

100824410

66053656

The preparation time of this page was 0.2 [sec].


Species	ppo	gma	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre	mtr
Paralog	4	3	3	3	2	3	3	2	3	3	3	2	3	3	3	3	3	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7471483 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7471483 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**