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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   112940021   pentatricopeptide repeat-containing protein At3g09040, mitochondrial 
 sly-r.6   112940021   pentatricopeptide repeat-containing protein At3g09040, mitochondrial 
 sot-r.1   102595255   pentatricopeptide repeat-containing protein At3g09040, mitochondrial 
 nta-r.1   107820458   pentatricopeptide repeat-containing protein At3g09040, mitochondrial-like 
 nta-r.1   107814835   pentatricopeptide repeat-containing protein At3g09040, mitochondrial 
 ath-u.5   AT3G09040   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5   100800995   pentatricopeptide repeat-containing protein At3g09040, mitochondrial 
 bra-r.6   103859314   pentatricopeptide repeat-containing protein At3g09040, mitochondrial 
 vvi-u.5   100257512   pentatricopeptide repeat-containing protein At3g09040, mitochondrial 
 ghi-r.1   107910433   pentatricopeptide repeat-containing protein At3g09040, mitochondrial 
 ghi-r.1   107951520   pentatricopeptide repeat-containing protein At3g09040, mitochondrial 
 cit-r.1   102619190   pentatricopeptide repeat-containing protein At3g09040, mitochondrial 
 osa-u.5   4336394   pentatricopeptide repeat-containing protein At3g09040, mitochondrial 
 zma-u.5   103646227   pentatricopeptide repeat-containing protein At3g09040, mitochondrial 
 tae-r.2   123068715   pentatricopeptide repeat-containing protein At3g09040, mitochondrial 
 hvu-r.1   123442758   pentatricopeptide repeat-containing protein At3g09040, mitochondrial-like 
 sbi-r.1   8075929   pentatricopeptide repeat-containing protein At3g09040, mitochondrial 
 bdi-r.1   112268514   pentatricopeptide repeat-containing protein At3g09040, mitochondrial 

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Top 50 coexpressed genes to 112940021 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 112940021 (sly-u.5 coexpression data)

CoexMap"112940021"


slyLOC112940021 | Entrez gene ID : 112940021    
Species sly sot nta ath gma bra vvi ghi cit osa zma tae hvu sbi bdi ppo cre mtr bna
Paralog 2 1 2 1 1 1 1 2 1 1 1 1 1 1 1 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (280 genes)  IEA  
GO CC
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (5687 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1208 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein XP_025886560.1 [sequence] [blastp]
XP_069153370.1 [sequence] [blastp]
XP_069153371.1 [sequence] [blastp]
XP_069153372.1 [sequence] [blastp]
XP_069153373.1 [sequence] [blastp]
XP_069153374.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 5,  cyto_mito 4,  chlo 3,  nucl 1,  cysk 1,  cysk_nucl 1  (predict for XP_025886560.1)
mito 5,  cyto_mito 4,  chlo 2,  nucl 1  (predict for XP_069153370.1)
mito 5,  cyto_mito 4,  chlo 2,  nucl 1  (predict for XP_069153371.1)
mito 5,  cyto_mito 4,  chlo 2,  nucl 1  (predict for XP_069153372.1)
mito 5,  cyto_mito 4,  chlo 2,  nucl 1  (predict for XP_069153373.1)
mito 5,  cyto_mito 4,  chlo 2,  nucl 1  (predict for XP_069153374.1)
Subcellular
localization
TargetP
mito 9  (predict for XP_025886560.1)
mito 9  (predict for XP_069153370.1)
mito 9  (predict for XP_069153371.1)
mito 9  (predict for XP_069153372.1)
mito 9  (predict for XP_069153373.1)
mito 9  (predict for XP_069153374.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
112940021
sly-r.6
for
112940021
sot-r.1
for
102595255
nta-r.1
for
107820458
nta-r.1
for
107814835
ath-u.5
for
AT3G09040
gma-u.5
for
100800995
bra-r.6
for
103859314
vvi-u.5
for
100257512
ghi-r.1
for
107910433
ghi-r.1
for
107951520
cit-r.1
for
102619190
osa-u.5
for
4336394
zma-u.5
for
103646227
tae-r.2
for
123068715
hvu-r.1
for
123442758
sbi-r.1
for
8075929
bdi-r.1
for
112268514


Ortholog ID: 10745
Species sly sot nta nta ath gma bra vvi ghi ghi cit osa zma tae tae hvu sbi bdi
Symbol LOC112940021 LOC102595255 LOC107820458 LOC107814835 AT3G09040 LOC100800995 LOC103859314 LOC100257512 LOC107910433 LOC107951520 LOC102619190 LOC4336394 LOC103646227 LOC123068715 LOC123077224 LOC123442758 LOC8075929 LOC112268514
Function* pentatricopeptide repeat-containing protein At3g09040, mitochondrial pentatricopeptide repeat-containing protein At3g09040, mitochondrial pentatricopeptide repeat-containing protein At3g09040, mitochondrial-like pentatricopeptide repeat-containing protein At3g09040, mitochondrial Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At3g09040, mitochondrial pentatricopeptide repeat-containing protein At3g09040, mitochondrial pentatricopeptide repeat-containing protein At3g09040, mitochondrial pentatricopeptide repeat-containing protein At3g09040, mitochondrial pentatricopeptide repeat-containing protein At3g09040, mitochondrial pentatricopeptide repeat-containing protein At3g09040, mitochondrial pentatricopeptide repeat-containing protein At3g09040, mitochondrial pentatricopeptide repeat-containing protein At3g09040, mitochondrial pentatricopeptide repeat-containing protein At3g09040, mitochondrial pentatricopeptide repeat-containing protein At3g09040, mitochondrial pentatricopeptide repeat-containing protein At3g09040, mitochondrial-like pentatricopeptide repeat-containing protein At3g09040, mitochondrial pentatricopeptide repeat-containing protein At3g09040, mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 3
sot00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03430 Mismatch repair 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 112940021 102595255 107820458 107814835 820057 100800995 103859314 100257512 107910433 107951520 102619190 4336394 103646227 123068715 123077224 123442758 8075929 112268514
The preparation time of this page was 4.3 [sec].