ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
mtr-u.5	11405855	E3 ubiquitin-protein ligase RNF185
mtr-r.5	11405855	E3 ubiquitin-protein ligase RNF185
mtr-m.5	11405855	E3 ubiquitin-protein ligase RNF185
mtr-u.5	25482097	E3 ubiquitin-protein ligase RNF5
gma-u.5	100794086	E3 ubiquitin-protein ligase RNF5
gma-u.5	100527488	E3 ubiquitin-protein ligase RNF5
gma-u.5	100811423	E3 ubiquitin-protein ligase RNF185
ppo-u.5	18104996	uncharacterized LOC18104996
ppo-u.5	7478003	uncharacterized LOC7478003
ppo-u.5	7483773	uncharacterized LOC7483773
ath-u.5	AT2G23780	RING/U-box superfamily protein
ath-u.5	AT1G19310	RING/U-box superfamily protein
bra-r.6	103872727	E3 ubiquitin-protein ligase RNF185
bra-r.6	103249148	E3 ubiquitin-protein ligase RNF185
vvi-u.5	100245178	E3 ubiquitin-protein ligase RNF5-like
vvi-u.5	100259073	uncharacterized LOC100259073
vvi-u.5	100246078	uncharacterized LOC100246078
ghi-r.1	107945670	E3 ubiquitin-protein ligase RNF185
ghi-r.1	107922316	E3 ubiquitin-protein ligase RNF185-like
ghi-r.1	107926562	E3 ubiquitin-protein ligase RNF5
bna-r.1	106397006	E3 ubiquitin-protein ligase RNF185
bna-r.1	106352855	E3 ubiquitin-protein ligase RNF185
cit-r.1	102619686	uncharacterized LOC102619686
cit-r.1	102626834	uncharacterized LOC102626834
sly-u.5	101263175	uncharacterized LOC101263175
sly-u.5	101267944	uncharacterized LOC101267944
sly-u.5	101262966	uncharacterized LOC101262966
sot-r.1	102600779	E3 ubiquitin-protein ligase RNF185-like
sot-r.1	102594316	RING finger protein 5-like
sot-r.1	102582225	E3 ubiquitin-protein ligase RNF185-like
nta-r.1	107760256	E3 ubiquitin-protein ligase RMA3-like
nta-r.1	107826227	uncharacterized LOC107826227
nta-r.1	107815714	uncharacterized LOC107815714
osa-u.5	4325492	uncharacterized LOC4325492
osa-u.5	4333714	uncharacterized LOC4333714
osa-u.5	4352888	uncharacterized LOC4352888
zma-u.5	100285907	uncharacterized LOC100285907
zma-u.5	100283782	RING finger protein 5
zma-u.5	100217249	putative RING zinc finger domain superfamily protein
tae-r.2	123087300	E3 ubiquitin-protein ligase RNF5
hvu-r.1	123397851	E3 ubiquitin-protein ligase RNF5-like
hvu-r.1	123447066	E3 ubiquitin-protein ligase RNF5-like
sbi-r.1	8054177	E3 ubiquitin-protein ligase RNF5
sbi-r.1	8071535	E3 ubiquitin-protein ligase RNF5
bdi-r.1	100839731	E3 ubiquitin-protein ligase RNF185
bdi-r.1	100830874	E3 ubiquitin-protein ligase RNF185
cre-r.1	CHLRE_17g739100v5	uncharacterized protein

Top 50 coexpressed genes to 11405855 (mtr-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 11405855 (mtr-u.5 coexpression data)

CoexMap"11405855"

[Cytoscape]

Annotation

functional annotation

KEGG

mtr04141 [list] [network] Protein processing in endoplasmic reticulum (256 genes)

GO BP

GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process

(368 genes)

IEA

GO CC

GO:0005783 [list] [network] endoplasmic reticulum

(487 genes)

IEA

GO MF

GO:0061630 [list] [network] ubiquitin protein ligase activity

(196 genes)

IEA

Protein

XP_003611911.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, vacu 2, cyto_nucl 2, cysk_nucl 2

(predict for XP_003611911.1)

Subcellular
localization
TargetP

other 4, chlo 3

(predict for XP_003611911.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 11405855	mtr-r.5 for 11405855	mtr-m.5 for 11405855	mtr-u.5 for 25482097	gma-u.5 for 100794086	gma-u.5 for 100527488	gma-u.5 for 100811423	ppo-u.5 for 18104996	ppo-u.5 for 7478003	ppo-u.5 for 7483773	ath-u.5 for AT2G23780	ath-u.5 for AT1G19310	bra-r.6 for 103872727	bra-r.6 for 103249148	vvi-u.5 for 100245178	vvi-u.5 for 100259073	vvi-u.5 for 100246078	ghi-r.1 for 107945670	ghi-r.1 for 107922316	ghi-r.1 for 107926562	bna-r.1 for 106397006	bna-r.1 for 106352855	cit-r.1 for 102619686	cit-r.1 for 102626834	sly-u.5 for 101263175	sly-u.5 for 101267944	sly-u.5 for 101262966	sot-r.1 for 102600779	sot-r.1 for 102594316	sot-r.1 for 102582225	nta-r.1 for 107760256	nta-r.1 for 107826227	nta-r.1 for 107815714	osa-u.5 for 4325492	osa-u.5 for 4333714	osa-u.5 for 4352888	zma-u.5 for 100285907	zma-u.5 for 100283782	zma-u.5 for 100217249	tae-r.2 for 123087300	hvu-r.1 for 123397851	hvu-r.1 for 123447066	sbi-r.1 for 8054177	sbi-r.1 for 8071535	bdi-r.1 for 100839731	bdi-r.1 for 100830874	cre-r.1 for CHLRE_17g739100v5

Ortholog

Ortholog ID: 1568

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

E3 ubiquitin-protein ligase RNF185

E3 ubiquitin-protein ligase RNF5

E3 ubiquitin-protein ligase RNF185

uncharacterized LOC18104996

uncharacterized LOC7483773

uncharacterized LOC18099325

RING/U-box superfamily protein

E3 ubiquitin-protein ligase RNF185

E3 ubiquitin-protein ligase RNF5-like

uncharacterized LOC100259073

uncharacterized LOC100246078

E3 ubiquitin-protein ligase RNF5

E3 ubiquitin ligase rnf-5

E3 ubiquitin-protein ligase RNF185

uncharacterized LOC102619686

uncharacterized LOC102626834

uncharacterized LOC101263175

uncharacterized LOC101262966

uncharacterized LOC101256837

E3 ubiquitin-protein ligase RNF185-like

RING finger protein 5-like

E3 ubiquitin-protein ligase RNF5-like

uncharacterized LOC107815714

uncharacterized LOC107811368

uncharacterized LOC107801886

uncharacterized LOC4325492

uncharacterized LOC4333714

uncharacterized LOC4352888

RING finger protein 5

putative RING zinc finger domain superfamily protein

uncharacterized LOC100193211

E3 ubiquitin-protein ligase RNF5

E3 ubiquitin-protein ligase RNF5-like

E3 ubiquitin-protein ligase RNF5

E3 ubiquitin-protein ligase RNF185

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	3
ppo04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	4
ppo04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	5
ppo04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	3
ath03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	3
bra04144	Endocytosis	3
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03018	RNA degradation	3
bra03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03015	mRNA surveillance pathway	2
vvi00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04120	Ubiquitin mediated proteolysis	4
vvi04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	4
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	3
sot03040	Spliceosome	2
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04145	Phagosome	3
sot00190	Oxidative phosphorylation	2
sot04142	Lysosome	2
sot04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	9
nta03040	Spliceosome	3
nta04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04081	Hormone signaling	4
nta04082	Neuroactive ligand signaling	4
nta00592	alpha-Linolenic acid metabolism	3
nta04075	Plant hormone signal transduction	2
nta00071	Fatty acid degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04081	Hormone signaling	4
nta04082	Neuroactive ligand signaling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	4
osa03040	Spliceosome	2
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	3
zma04141	Protein processing in endoplasmic reticulum	2
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	5
zma04120	Ubiquitin mediated proteolysis	4
zma03040	Spliceosome	2
zma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	7
tae04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00071	Fatty acid degradation	3
tae04146	Peroxisome	3
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	3
hvu04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00051	Fructose and mannose metabolism	2
sbi00520	Amino sugar and nucleotide sugar metabolism	2
sbi01240	Biosynthesis of cofactors	2
sbi01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	2

Expression

Expression pattern

Entrez Gene ID^*

11405855

25482097

100527488

100811423

100814783

18104996

7483773

18099325

816910

838513

103872727

103249148

100245178

100259073

100246078

107926562

107943001

121209684

106397006

102619686

102626834

101263175

101262966

101256837

102600779

102594316

102590885

107815714

107811368

107801886

4325492

4333714

4352888

100283782

100217249

100193211

123095670

123101976

123397851

123447066

8054177

8071535

100839731

100830874

5717114

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Species	mtr	gma	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	2	2	3	3	2	2	3	3	3	3	3	1	2	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 11405855 (mtr-u.5 coexpression data)

Top 50 enrichment test to 11405855 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**