ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
mtr-u.5	11410657	polygalacturonase 1 beta-like protein 3
mtr-r.5	11410657	polygalacturonase 1 beta-like protein 3
mtr-m.5	11410657	polygalacturonase 1 beta-like protein 3
mtr-u.5	11442190	polygalacturonase 1 beta-like protein 1
gma-u.5	100776642	polygalacturonase 1 beta-like protein 3
gma-u.5	100779518	polygalacturonase 1 beta-like protein 3
gma-u.5	100797939	polygalacturonase 1 beta-like protein 3
ppo-u.5	7458030	polygalacturonase 1 beta-like protein 3
ppo-u.5	112323253	polygalacturonase 1 beta-like protein 3
ppo-u.5	7473225	polygalacturonase 1 beta-like protein 3
ath-u.5	JP630	BURP domain-containing protein
ath-u.5	PG1	polygalacturonase 1
ath-u.5	PG2	polygalacturonase 2
bra-r.6	103831568	polygalacturonase 1 beta-like protein 3
bra-r.6	103838513	polygalacturonase 1 beta-like protein 2
vvi-u.5	100258559	polygalacturonase 1 beta-like protein 1
vvi-u.5	100263873	polygalacturonase 1 beta-like protein 3
vvi-u.5	100248300	polygalacturonase 1 beta-like protein 3
ghi-r.1	121220259	polygalacturonase 1 beta-like protein 3
ghi-r.1	107940877	polygalacturonase 1 beta-like protein 3
ghi-r.1	107910159	polygalacturonase 1 beta-like protein 3
bna-r.1	106418190	polygalacturonase 1 beta-like protein 3
bna-r.1	106381970	polygalacturonase 1 beta-like protein 2
bna-r.1	106429090	polygalacturonase 1 beta-like protein 2
cit-r.1	102612793	polygalacturonase 1 beta-like protein 3
cit-r.1	102613096	polygalacturonase 1 beta-like protein 3
sly-u.5	101247712	polygalacturonase 1 beta-like protein 3
sly-u.5	GP1	polygalacturonase isoenzyme 1 beta subunit
sly-u.5	AROGP3	polygalacturonase non-catalytic subunit AroGP3
sot-r.1	102602358	polygalacturonase non-catalytic subunit AroGP2-like
sot-r.1	102603032	polygalacturonase non-catalytic subunit AroGP3-like
sot-r.1	102602029	polygalacturonase non-catalytic subunit AroGP2
nta-r.1	107820175	polygalacturonase non-catalytic subunit AroGP3
nta-r.1	107829501	polygalacturonase-1 non-catalytic subunit beta-like
nta-r.1	107820174	polygalacturonase non-catalytic subunit AroGP3-like
osa-u.5	4345440	BURP domain-containing protein 12-like
osa-u.5	4348595	BURP domain-containing protein 16-like
zma-u.5	100279594	uncharacterized LOC100279594
zma-u.5	103632591	BURP domain-containing protein 14-like
tae-r.2	123150607	BURP domain-containing protein 12
tae-r.2	123167576	BURP domain-containing protein 12
tae-r.2	123131613	BURP domain-containing protein 14-like
hvu-r.1	123411909	BURP domain-containing protein 12-like
hvu-r.1	123451227	BURP domain-containing protein 12-like
sbi-r.1	8073509	BURP domain-containing protein 12
bdi-r.1	100825122	BURP domain-containing protein 12

Top 50 coexpressed genes to 11410657 (mtr-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 11410657 (mtr-u.5 coexpression data)

CoexMap"11410657"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_003613234.1 [sequence] [blastp]
XP_039690339.1 [sequence] [blastp]

Subcellular
localization
wolf

extr 5, chlo 4	(predict for XP_003613234.1)
extr 5, chlo 4	(predict for XP_039690339.1)

Subcellular
localization
TargetP

scret 9	(predict for XP_003613234.1)
scret 9	(predict for XP_039690339.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 11410657	mtr-r.5 for 11410657	mtr-m.5 for 11410657	mtr-u.5 for 11442190	gma-u.5 for 100776642	gma-u.5 for 100779518	gma-u.5 for 100797939	ppo-u.5 for 7458030	ppo-u.5 for 112323253	ppo-u.5 for 7473225	ath-u.5 for JP630	ath-u.5 for PG1	ath-u.5 for PG2	bra-r.6 for 103831568	bra-r.6 for 103838513	vvi-u.5 for 100258559	vvi-u.5 for 100263873	vvi-u.5 for 100248300	ghi-r.1 for 121220259	ghi-r.1 for 107940877	ghi-r.1 for 107910159	bna-r.1 for 106418190	bna-r.1 for 106381970	bna-r.1 for 106429090	cit-r.1 for 102612793	cit-r.1 for 102613096	sly-u.5 for 101247712	sly-u.5 for GP1	sly-u.5 for AROGP3	sot-r.1 for 102602358	sot-r.1 for 102603032	sot-r.1 for 102602029	nta-r.1 for 107820175	nta-r.1 for 107829501	nta-r.1 for 107820174	osa-u.5 for 4345440	osa-u.5 for 4348595	zma-u.5 for 100279594	zma-u.5 for 103632591	tae-r.2 for 123150607	tae-r.2 for 123167576	tae-r.2 for 123131613	hvu-r.1 for 123411909	hvu-r.1 for 123451227	sbi-r.1 for 8073509	bdi-r.1 for 100825122

Ortholog

Ortholog ID: 1288

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

JP630

PG1

PG2

AROGP3

Function^*

polygalacturonase 1 beta-like protein 1

polygalacturonase 1 beta-like protein 3

BURP domain-containing protein

polygalacturonase 1

polygalacturonase 2

polygalacturonase 1 beta-like protein 3

polygalacturonase 1 beta-like protein 2

polygalacturonase 1 beta-like protein 1

polygalacturonase 1 beta-like protein 3

polygalacturonase non-catalytic subunit AroGP3

polygalacturonase-1 non-catalytic subunit beta-like

polygalacturonase non-catalytic subunit AroGP3-like

polygalacturonase non-catalytic subunit AroGP2

probable polygalacturonase non-catalytic subunit JP650

polygalacturonase non-catalytic subunit AroGP3-like

polygalacturonase 1 beta-like protein 2

BURP domain-containing protein 12-like

BURP domain-containing protein 16-like

uncharacterized LOC100279594

BURP domain-containing protein 14-like

BURP domain-containing protein 12

BURP domain-containing protein 14

BURP domain-containing protein 12-like

BURP domain-containing protein 12

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01240	Biosynthesis of cofactors	3
ppo00130	Ubiquinone and other terpenoid-quinone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00564	Glycerophospholipid metabolism	2
ppo00565	Ether lipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi02010	ABC transporters	2
ghi04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi02010	ABC transporters	2
ghi04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00040	Pentose and glucuronate interconversions	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	4
nta00520	Amino sugar and nucleotide sugar metabolism	3
nta01250	Biosynthesis of nucleotide sugars	3
nta04145	Phagosome	2
nta04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04016	MAPK signaling pathway - plant	3
osa04075	Plant hormone signal transduction	3
osa04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00062	Fatty acid elongation	3
tae04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00062	Fatty acid elongation	3
tae04626	Plant-pathogen interaction	3
tae00073	Cutin, suberine and wax biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00910	Nitrogen metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00940	Phenylpropanoid biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi02010	ABC transporters	2
bdi04981	Folate transport and metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

11442190

100811362

102669155

7458030

112323253

7473225

838987

842334

843373

103831568

103838513

100258559

100263873

100248300

107940877

107910159

107940699

106418190

125576317

106353791

102612793

102613096

101247712

101251775

101252390

102603032

102602029

102593329

107820174

107815214

107803404

4345440

4348595

100279594

103632591

123150607

123167576

123142970

123411909

123451227

8073509

100825122

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Species	mtr	gma	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	3	2	3	3	3	2	3	3	3	2	2	3	2	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 11410657 (mtr-u.5 coexpression data)

Top 50 enrichment test to 11410657 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**