ATTED-II : GeneCoexpression result

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Orthologous genes in OrthoFinder^**

Species	Gene	Description
mtr-m.5	11414479	protein IMPAIRED IN BABA-INDUCED STERILITY 1
mtr-u.5	25493849	protein IMPAIRED IN BABA-INDUCED STERILITY 1
gma-u.5	100796719	protein IMPAIRED IN BABA-INDUCED STERILITY 1
gma-u.5	100790917	protein IMPAIRED IN BABA-INDUCED STERILITY 1
gma-u.5	100816047	protein IMPAIRED IN BABA-INDUCED STERILITY 1
ppo-u.5	7487133	protein IMPAIRED IN BABA-INDUCED STERILITY 1
ppo-u.5	7495996	cyclin-dependent kinase C-2 C
ppo-u.5	18105782	protein IMPAIRED IN BABA-INDUCED STERILITY 1
ath-u.5	cdc2cAt	CDC2C
ath-u.5	IBS1	Protein kinase superfamily protein
ath-u.5	AT1G74330	Protein kinase superfamily protein
bra-r.6	103863843	protein IMPAIRED IN BABA-INDUCED STERILITY 1
bra-r.6	103831904	protein IMPAIRED IN BABA-INDUCED STERILITY 1
vvi-u.5	100852764	protein IMPAIRED IN BABA-INDUCED STERILITY 1
vvi-u.5	100268091	protein IMPAIRED IN BABA-INDUCED STERILITY 1
ghi-r.1	107888566	protein IMPAIRED IN BABA-INDUCED STERILITY 1
ghi-r.1	107886108	protein IMPAIRED IN BABA-INDUCED STERILITY 1
ghi-r.1	107931506	protein IMPAIRED IN BABA-INDUCED STERILITY 1
bna-r.1	106354377	protein IMPAIRED IN BABA-INDUCED STERILITY 1
bna-r.1	106453934	protein IMPAIRED IN BABA-INDUCED STERILITY 1
cit-r.1	102627065	protein IMPAIRED IN BABA-INDUCED STERILITY 1-like
sly-u.5	101257252	protein IMPAIRED IN BABA-INDUCED STERILITY 1
sly-u.5	101246005	protein IMPAIRED IN BABA-INDUCED STERILITY 1-like
sot-r.1	102600852	probable serine/threonine-protein kinase At1g54610
sot-r.1	102605724	probable serine/threonine-protein kinase At1g54610
nta-r.1	107772072	protein IMPAIRED IN BABA-INDUCED STERILITY 1
nta-r.1	107775675	protein IMPAIRED IN BABA-INDUCED STERILITY 1
nta-r.1	107785221	protein IMPAIRED IN BABA-INDUCED STERILITY 1-like
osa-u.5	4343794	protein IMPAIRED IN BABA-INDUCED STERILITY 1
osa-u.5	4352620	probable serine/threonine-protein kinase At1g54610
zma-u.5	100383830	uncharacterized LOC100383830
zma-u.5	100383325	uncharacterized LOC100383325
zma-u.5	100192893	uncharacterized LOC100192893
tae-r.2	123044340	protein IMPAIRED IN BABA-INDUCED STERILITY 1
tae-r.2	123052206	protein IMPAIRED IN BABA-INDUCED STERILITY 1
tae-r.2	123110626	protein IMPAIRED IN BABA-INDUCED STERILITY 1
hvu-r.1	123425457	protein IMPAIRED IN BABA-INDUCED STERILITY 1-like
hvu-r.1	123399083	protein IMPAIRED IN BABA-INDUCED STERILITY 1-like
sbi-r.1	8068131	probable serine/threonine-protein kinase At1g54610
sbi-r.1	8060631	probable serine/threonine-protein kinase At1g54610
bdi-r.1	100822826	protein IMPAIRED IN BABA-INDUCED STERILITY 1
bdi-r.1	100833133	protein IMPAIRED IN BABA-INDUCED STERILITY 1

Top 50 coexpressed genes to 11414479 (mtr-m.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 11414479 (mtr-m.5 coexpression data)

CoexMap""

[Cytoscape]

Annotation

functional annotation

Function

protein IMPAIRED IN BABA-INDUCED STERILITY 1

KEGG

GO BP

GO:0032968 [list] [network] positive regulation of transcription elongation by RNA polymerase II	(23 genes)	IEA
GO:0006468 [list] [network] protein phosphorylation	(1433 genes)	IEA

GO CC

GO:0000307 [list] [network] cyclin-dependent protein kinase holoenzyme complex	(33 genes)	IEA
GO:0005634 [list] [network] nucleus	(2707 genes)	IEA

GO MF

GO:0008353 [list] [network] RNA polymerase II CTD heptapeptide repeat kinase activity	(20 genes)	IEA
GO:0005524 [list] [network] ATP binding	(2502 genes)	IEA

Protein

XP_024641220.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, extr 4, vacu 1, nucl 1, cyto 1, cyto_nucl 1, E.R._vacu 1

(predict for XP_024641220.1)

Subcellular
localization
TargetP

chlo 4, other 3

(predict for XP_024641220.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-m.5 for 11414479	mtr-u.5 for 25493849	gma-u.5 for 100796719	gma-u.5 for 100790917	gma-u.5 for 100816047	ppo-u.5 for 7487133	ppo-u.5 for 7495996	ppo-u.5 for 18105782	ath-u.5 for cdc2cAt	ath-u.5 for IBS1	ath-u.5 for AT1G74330	bra-r.6 for 103863843	bra-r.6 for 103831904	vvi-u.5 for 100852764	vvi-u.5 for 100268091	ghi-r.1 for 107888566	ghi-r.1 for 107886108	ghi-r.1 for 107931506	bna-r.1 for 106354377	bna-r.1 for 106453934	cit-r.1 for 102627065	sly-u.5 for 101257252	sly-u.5 for 101246005	sot-r.1 for 102600852	sot-r.1 for 102605724	nta-r.1 for 107772072	nta-r.1 for 107775675	nta-r.1 for 107785221	osa-u.5 for 4343794	osa-u.5 for 4352620	zma-u.5 for 100383830	zma-u.5 for 100383325	zma-u.5 for 100192893	tae-r.2 for 123044340	tae-r.2 for 123052206	tae-r.2 for 123110626	hvu-r.1 for 123425457	hvu-r.1 for 123399083	sbi-r.1 for 8068131	sbi-r.1 for 8060631	bdi-r.1 for 100822826	bdi-r.1 for 100833133

Please wait a moment.

Ortholog

Ortholog ID: 2176

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

cdc2cAt

IBS1

Function^*

protein IMPAIRED IN BABA-INDUCED STERILITY 1

cyclin-dependent kinase C-2 C

protein IMPAIRED IN BABA-INDUCED STERILITY 1

CDC2C

Protein kinase superfamily protein

protein IMPAIRED IN BABA-INDUCED STERILITY 1

protein IMPAIRED IN BABA-INDUCED STERILITY 1-like

protein IMPAIRED IN BABA-INDUCED STERILITY 1

protein IMPAIRED IN BABA-INDUCED STERILITY 1-like

probable serine/threonine-protein kinase At1g54610

protein IMPAIRED IN BABA-INDUCED STERILITY 1-like

protein IMPAIRED IN BABA-INDUCED STERILITY 1

probable serine/threonine-protein kinase At1g54610

uncharacterized LOC100383830

uncharacterized LOC100383325

uncharacterized LOC100192893

protein IMPAIRED IN BABA-INDUCED STERILITY 1

protein IMPAIRED IN BABA-INDUCED STERILITY 1-like

probable serine/threonine-protein kinase At1g54610

protein IMPAIRED IN BABA-INDUCED STERILITY 1

Coexmap

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Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00040	Pentose and glucuronate interconversions	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00940	Phenylpropanoid biosynthesis	6
gma00360	Phenylalanine metabolism	4
gma00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
gma00941	Flavonoid biosynthesis	2
gma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04814	Motor proteins	3
ppo00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00040	Pentose and glucuronate interconversions	3
ppo00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00040	Pentose and glucuronate interconversions	3
ath04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00905	Brassinosteroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	2
sly04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04814	Motor proteins	3
sly04145	Phagosome	2
sly04517	IgSF CAM signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04814	Motor proteins	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00062	Fatty acid elongation	2
nta01040	Biosynthesis of unsaturated fatty acids	2
nta01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04626	Plant-pathogen interaction	3
zma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04814	Motor proteins	3
sbi00020	Citrate cycle (TCA cycle)	2
sbi00270	Cysteine and methionine metabolism	2
sbi00566	Sulfoquinovose metabolism	2
sbi00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	3
sbi04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00400	Phenylalanine, tyrosine and tryptophan biosynthesis	3
bdi01230	Biosynthesis of amino acids	3
bdi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2

Expression

Expression pattern

Entrez Gene ID^*

25493849

100796719

100803328

100784406

7487133

7495996

18105782

833938

838448

843774

103863843

103831904

100852764

100268091

107886108

107931506

121206611

106361983

102627065

101257252

101246005

102600852

102605724

107785221

107827522

107814263

4343794

4352620

100383830

100383325

100192893

123052206

123119651

123188068

123425457

123399083

8068131

8060631

100822826

100833133

The preparation time of this page was 0.5 [sec].


Species	mtr	gma	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	2	3	3	3	2	2	3	2	1	2	2	3	2	3	3	2	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 11414479 (mtr-m.5 coexpression data)

Top 50 enrichment test to 11414479 (mtr-m.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**