ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
mtr-u.5	11419389	uncharacterized LOC11419389
mtr-r.5	11419389	uncharacterized LOC11419389
mtr-m.5	11419389	uncharacterized LOC11419389
gma-u.5	100816444	uncharacterized LOC100816444
gma-u.5	100788212	uncharacterized LOC100788212
ppo-u.5	112326972	uncharacterized LOC112326972
ath-u.5	AT1G17450	B-block binding subunit of TFIIIC
bra-r.6	103828562	uncharacterized LOC103828562
vvi-u.5	100267761	uncharacterized LOC100267761
ghi-r.1	121230835	uncharacterized LOC121230835
ghi-r.1	107962191	uncharacterized LOC107962191
ghi-r.1	107960304	uncharacterized LOC107960304
bna-r.1	106404131	uncharacterized LOC106404131
bna-r.1	106373017	uncharacterized LOC106373017
bna-r.1	106409094	uncharacterized LOC106409094
cit-r.1	102628666	uncharacterized LOC102628666
sly-u.5	101258404	uncharacterized LOC101258404
sot-r.1	102604011	uncharacterized LOC102604011
sot-r.1	107062014	uncharacterized LOC107062014
nta-r.1	107772692	uncharacterized LOC107772692
nta-r.1	107773984	uncharacterized LOC107773984
nta-r.1	107813492	uncharacterized LOC107813492
osa-u.5	9266913	uncharacterized LOC9266913
osa-u.5	4339658	uncharacterized LOC4339658
osa-u.5	4330065	uncharacterized LOC4330065
zma-u.5	118472110	uncharacterized LOC118472110
zma-u.5	118472111	uncharacterized LOC118472111
zma-u.5	103627728	uncharacterized LOC103627728
tae-r.2	123137555	uncharacterized LOC123137555
tae-r.2	123144895	uncharacterized LOC123144895
tae-r.2	123148919	uncharacterized LOC123148919
hvu-r.1	123401298	uncharacterized LOC123401298
hvu-r.1	123452170	uncharacterized LOC123452170
sbi-r.1	8072962	uncharacterized LOC8072962
sbi-r.1	8075715	uncharacterized LOC8075715
bdi-r.1	100846116	uncharacterized LOC100846116
cre-r.1	CHLRE_12g518107v5	uncharacterized protein

Top 50 coexpressed genes to 11419389 (mtr-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 11419389 (mtr-u.5 coexpression data)

CoexMap"11419389"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0042791 [list] [network] 5S class rRNA transcription by RNA polymerase III	(1 genes)	IEA
GO:0006384 [list] [network] transcription initiation at RNA polymerase III promoter	(14 genes)	IEA

GO CC

GO:0000127 [list] [network] transcription factor TFIIIC complex

(8 genes)

IEA

GO MF

GO:0003677 [list] [network] DNA binding

(2104 genes)

IEA

Protein

XP_003598010.2 [sequence] [blastp]
XP_024633521.1 [sequence] [blastp]
XP_024633523.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, chlo 1, plas 1, cysk 1, cysk_plas 1	(predict for XP_003598010.2)
nucl 8, chlo 1, plas 1, cysk 1, cysk_plas 1	(predict for XP_024633521.1)
nucl 8, chlo 1, plas 1, cysk 1, cysk_plas 1	(predict for XP_024633523.1)

Subcellular
localization
TargetP

other 5, chlo 3	(predict for XP_003598010.2)
other 5, chlo 3	(predict for XP_024633521.1)
other 5, chlo 3	(predict for XP_024633523.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 11419389	mtr-r.5 for 11419389	mtr-m.5 for 11419389	gma-u.5 for 100816444	gma-u.5 for 100788212	ppo-u.5 for 112326972	ath-u.5 for AT1G17450	bra-r.6 for 103828562	vvi-u.5 for 100267761	ghi-r.1 for 121230835	ghi-r.1 for 107962191	ghi-r.1 for 107960304	bna-r.1 for 106404131	bna-r.1 for 106373017	bna-r.1 for 106409094	cit-r.1 for 102628666	sly-u.5 for 101258404	sot-r.1 for 102604011	sot-r.1 for 107062014	nta-r.1 for 107772692	nta-r.1 for 107773984	nta-r.1 for 107813492	osa-u.5 for 9266913	osa-u.5 for 4339658	osa-u.5 for 4330065	zma-u.5 for 118472110	zma-u.5 for 118472111	zma-u.5 for 103627728	tae-r.2 for 123137555	tae-r.2 for 123144895	tae-r.2 for 123148919	hvu-r.1 for 123401298	hvu-r.1 for 123452170	sbi-r.1 for 8072962	sbi-r.1 for 8075715	bdi-r.1 for 100846116	cre-r.1 for CHLRE_12g518107v5

Ortholog

Ortholog ID: 3393

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC11419389

uncharacterized LOC100816444

uncharacterized LOC100814813

uncharacterized LOC112326972

B-block binding subunit of TFIIIC

uncharacterized LOC103828562

uncharacterized LOC100267761

uncharacterized LOC107962191

uncharacterized LOC107960304

uncharacterized LOC107931588

uncharacterized LOC106404131

uncharacterized LOC106373017

uncharacterized LOC106409094

uncharacterized LOC102628666

uncharacterized LOC101258404

uncharacterized LOC102604011

uncharacterized LOC107062014

uncharacterized LOC107772692

uncharacterized LOC107773984

uncharacterized LOC107813492

uncharacterized LOC9266913

uncharacterized LOC4339658

uncharacterized LOC4330065

uncharacterized LOC118472110

uncharacterized LOC118472111

uncharacterized LOC100279143

uncharacterized LOC123137555

uncharacterized LOC123148919

uncharacterized LOC123127695

uncharacterized LOC123401298

uncharacterized LOC123452170

uncharacterized LOC8072962

uncharacterized LOC110434836

uncharacterized LOC8066182

uncharacterized LOC100846116

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4
gma03013	Nucleocytoplasmic transport	3
gma03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04120	Ubiquitin mediated proteolysis	3
ath03018	RNA degradation	3
ath04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	4
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03082	ATP-dependent chromatin remodeling	4
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	4
ghi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04814	Motor proteins	2
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	4
ghi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	5
bna03013	Nucleocytoplasmic transport	2
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	5
bna03013	Nucleocytoplasmic transport	2
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	2
bna03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	2
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03083	Polycomb repressive complex	4
nta03250	Viral life cycle - HIV-1	4
nta03015	mRNA surveillance pathway	2
nta03082	ATP-dependent chromatin remodeling	2
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	3
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00780	Biotin metabolism	3
tae01240	Biosynthesis of cofactors	3
tae03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	3
tae03013	Nucleocytoplasmic transport	2
tae03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

11419389

100816444

100814813

112326972

838317

103828562

100267761

107962191

107960304

107931588

106404131

106373017

106409094

102628666

101258404

102604011

107062014

107772692

107773984

107813492

9266913

4339658

4330065

118472110

118472111

100279143

123137555

123148919

123127695

123401298

123452170

8072962

110434836

8066182

100846116

66055576

The preparation time of this page was 0.1 [sec].


Species	mtr	gma	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	2	1	1	1	1	3	3	1	1	2	3	3	3	3	2	2	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 11419389 (mtr-u.5 coexpression data)

Top 50 enrichment test to 11419389 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**