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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   11434179   RNA pseudouridine synthase 6, chloroplastic 
 mtr-r.5   11434179   RNA pseudouridine synthase 6, chloroplastic 
 mtr-m.5   11434179   RNA pseudouridine synthase 6, chloroplastic 
 mtr-u.5   25486124   RNA pseudouridine synthase 6, chloroplastic 
 gma-u.5   100804907   RNA pseudouridine synthase 6, chloroplastic 
 gma-u.5   100791185   RNA pseudouridine synthase 6, chloroplastic 
 ppo-u.5   7458544   RNA pseudouridine synthase 6, chloroplastic 
 ath-u.5   AT4G21770   Pseudouridine synthase family protein 
 bra-r.6   103859419   RNA pseudouridine synthase 6, chloroplastic 
 vvi-u.5   100248694   RNA pseudouridine synthase 6, chloroplastic 
 ghi-r.1   107905945   RNA pseudouridine synthase 6, chloroplastic 
 ghi-r.1   107958255   RNA pseudouridine synthase 6, chloroplastic 
 bna-r.1   106347899   RNA pseudouridine synthase 6, chloroplastic 
 bna-r.1   111202196   RNA pseudouridine synthase 6, chloroplastic 
 cit-r.1   102607892   RNA pseudouridine synthase 6, chloroplastic 
 sly-u.5   101257827   RNA pseudouridine synthase 6, chloroplastic 
 sot-r.1   102589335   RNA pseudouridine synthase 6, chloroplastic 
 nta-r.1   107813088   RNA pseudouridine synthase 6, chloroplastic 
 zma-u.5   103647913   RNA pseudouridine synthase 6, chloroplastic 
 tae-r.2   123187635   RNA pseudouridine synthase 6, chloroplastic 
 tae-r.2   123051723   RNA pseudouridine synthase 6, chloroplastic 
 hvu-r.1   123424880   RNA pseudouridine synthase 6, chloroplastic 
 sbi-r.1   8073142   RNA pseudouridine synthase 6, chloroplastic 
 bdi-r.1   100824239   RNA pseudouridine synthase 6, chloroplastic 
 cre-r.1   CHLRE_11g474850v5   uncharacterized protein 

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Top 50 coexpressed genes to 11434179 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 11434179 (mtr-u.5 coexpression data)

CoexMap"11434179"


mtrLOC11434179 | Entrez gene ID : 11434179      
Species mtr gma ppo ath bra vvi ghi bna cit sly sot nta zma tae hvu sbi bdi cre osa
Paralog 4 2 1 1 1 1 2 2 1 1 1 1 1 2 1 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000455 [list] [network] enzyme-directed rRNA pseudouridine synthesis  (8 genes)  IEA  
GO CC
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (21 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1400 genes)  IEA  
Protein XP_003626283.3 [sequence] [blastp]
XP_024626194.2 [sequence] [blastp]
Subcellular
localization
wolf
extr 3,  vacu 2,  chlo 1,  cyto_nucl 1,  E.R._vacu 1,  nucl 1,  cyto 1  (predict for XP_003626283.3)
cyto 5,  cyto_nucl 4,  nucl 1,  mito 1,  extr 1,  pero 1,  cysk_plas 1  (predict for XP_024626194.2)
Subcellular
localization
TargetP
chlo 4  (predict for XP_003626283.3)
other 9,  mito 4  (predict for XP_024626194.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
11434179
mtr-r.5
for
11434179
mtr-m.5
for
11434179
mtr-u.5
for
25486124
gma-u.5
for
100804907
gma-u.5
for
100791185
ppo-u.5
for
7458544
ath-u.5
for
AT4G21770
bra-r.6
for
103859419
vvi-u.5
for
100248694
ghi-r.1
for
107905945
ghi-r.1
for
107958255
bna-r.1
for
106347899
bna-r.1
for
111202196
cit-r.1
for
102607892
sly-u.5
for
101257827
sot-r.1
for
102589335
nta-r.1
for
107813088
zma-u.5
for
103647913
tae-r.2
for
123187635
tae-r.2
for
123051723
hvu-r.1
for
123424880
sbi-r.1
for
8073142
bdi-r.1
for
100824239
cre-r.1
for
CHLRE_11g474850v5


Ortholog ID: 9604
Species mtr mtr gma gma ppo ath bra vvi ghi ghi bna bna cit sly sot nta zma tae tae tae hvu sbi bdi cre
Symbol LOC11434179 LOC25486124 LOC100804907 LOC100791185 LOC7458544 AT4G21770 LOC103859419 LOC100248694 LOC107905945 LOC107958255 LOC106347899 LOC111202196 LOC102607892 LOC101257827 LOC102589335 LOC107813088 LOC103647913 LOC123187635 LOC123051723 LOC123043850 LOC123424880 LOC8073142 LOC100824239 CHLRE_11g474850v5
Function* RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic Pseudouridine synthase family protein RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01240 Biosynthesis of cofactors 2
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00240 Pyrimidine metabolism 3
mtr01240 Biosynthesis of cofactors 3
mtr00220 Arginine biosynthesis 2
mtr00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 5
bna00290 Valine, leucine and isoleucine biosynthesis 4
bna00770 Pantothenate and CoA biosynthesis 4
bna01210 2-Oxocarboxylic acid metabolism 4
bna01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 5
bna00290 Valine, leucine and isoleucine biosynthesis 4
bna00770 Pantothenate and CoA biosynthesis 4
bna01210 2-Oxocarboxylic acid metabolism 4
bna01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 4
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 2
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00270 Cysteine and methionine metabolism 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
tae00970 Aminoacyl-tRNA biosynthesis 3
tae00270 Cysteine and methionine metabolism 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 11434179 25486124 100804907 100791185 7458544 828265 103859419 100248694 107905945 107958255 106347899 111202196 102607892 101257827 102589335 107813088 103647913 123187635 123051723 123043850 123424880 8073142 100824239 66055307
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