ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
mtr-u.5	11438254	small RNA-binding protein 11, chloroplastic
mtr-r.5	11438254	small RNA-binding protein 11, chloroplastic
mtr-m.5	11438254	small RNA-binding protein 11, chloroplastic
mtr-u.5	11438930	glycine-rich RNA-binding protein 4, mitochondrial
mtr-u.5	11436305	glycine-rich RNA-binding protein 2, mitochondrial
gma-u.5	100806292	glycine-rich RNA-binding protein GRP1A
gma-u.5	112998378	glycine-rich RNA-binding protein GRP1A-like
ppo-u.5	18105741	glycine-rich RNA-binding protein 3, mitochondrial
ppo-u.5	7485193	organelle RRM domain-containing protein 6, chloroplastic
ppo-u.5	7485722	small RNA-binding protein 11, chloroplastic
ath-u.5	CCR1	cold, circadian rhythm, and RNA binding 1
ath-u.5	AT1G73530	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-u.5	GR-RBP3	glycine-rich RNA-binding protein 3
vvi-u.5	100854881	small RNA-binding protein 11, chloroplastic
vvi-u.5	100853676	glycine-rich RNA-binding protein GRP2A
vvi-u.5	100265324	glycine-rich RNA-binding protein 4, mitochondrial
sly-u.5	101266771	glycine-rich RNA-binding protein
sly-u.5	GRP1	glycine-rich RNA-binding protein-like
sly-u.5	101262262	glycine-rich RNA-binding protein
osa-u.5	9269592	organelle RRM domain-containing protein 6, chloroplastic
osa-u.5	9269210	glycine-rich RNA-binding protein 4, mitochondrial
osa-u.5	4352868	glycine-rich RNA-binding protein 2
zma-u.5	100191295	Glycine-rich RNA-binding protein 3 mitochondrial
zma-u.5	100194217	responsive to abscisic acid15
zma-u.5	100191146	uncharacterized LOC100191146

Top 50 coexpressed genes to 11438254 (mtr-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 11438254 (mtr-u.5 coexpression data)

CoexMap"11438254"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003723 [list] [network] RNA binding

(1400 genes)

IEA

Protein

XP_003599157.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, mito 2, vacu 2, cyto 1, plas 1, cyto_plas 1

(predict for XP_003599157.1)

Subcellular
localization
TargetP

chlo 4

(predict for XP_003599157.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 11438254	mtr-r.5 for 11438254	mtr-m.5 for 11438254	mtr-u.5 for 11438930	mtr-u.5 for 11436305	gma-u.5 for 100806292	gma-u.5 for 112998378	ppo-u.5 for 18105741	ppo-u.5 for 7485193	ppo-u.5 for 7485722	ath-u.5 for CCR1	ath-u.5 for AT1G73530	ath-u.5 for GR-RBP3	vvi-u.5 for 100854881	vvi-u.5 for 100853676	vvi-u.5 for 100265324	sly-u.5 for 101266771	sly-u.5 for GRP1	sly-u.5 for 101262262	osa-u.5 for 9269592	osa-u.5 for 9269210	osa-u.5 for 4352868	zma-u.5 for 100191295	zma-u.5 for 100194217	zma-u.5 for 100191146

Ortholog

Ortholog ID: 75

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

organelle RRM domain-containing protein 6, chloroplastic

glycine-rich RNA-binding protein 2, mitochondrial

RNA recognition motif-containing protein

putative glycine-rich RNA binding protein

small RNA-binding protein 11, chloroplastic

organelle RRM domain-containing protein 6, chloroplastic

RNA-binding (RRM/RBD/RNP motifs) family protein

glycine-rich RNA-binding protein 10

cold-inducible RNA-binding protein

organelle RRM domain-containing protein 6, chloroplastic

small RNA-binding protein 11, chloroplastic

glycine-rich RNA-binding protein GRP1A

glycine-rich RNA-binding protein 3, mitochondrial

small RNA-binding protein 11, chloroplastic

organelle RRM domain-containing protein 2, mitochondrial-like

glycine-rich RNA-binding protein 4, mitochondrial

glycine-rich RNA-binding protein 2, mitochondrial

glycine-rich RNA-binding protein

glycine-rich RNA-binding protein 4, mitochondrial

glycine-rich RNA-binding protein 2, mitochondrial-like

glycine-rich RNA-binding protein-like

glycine-rich RNA-binding protein 2, mitochondrial

glycine-rich RNA-binding protein blt801

uncharacterized LOC542725

glycine-rich RNA-binding protein 7

glycine-rich RNA-binding protein

organelle RRM domain-containing protein 6, chloroplastic

glycine-rich RNA-binding protein-like

glycine-rich RNA-binding protein blt801-like

small RNA-binding protein 11, chloroplastic

glycine-rich RNA-binding protein 4, mitochondrial-like

glycine-rich RNA-binding protein blt801

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	5
mtr03008	Ribosome biogenesis in eukaryotes	4
mtr03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	3
ppo00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00100	Steroid biosynthesis	4
ghi00940	Phenylpropanoid biosynthesis	3
ghi03013	Nucleocytoplasmic transport	2
ghi04120	Ubiquitin mediated proteolysis	2
ghi00905	Brassinosteroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4
bna04626	Plant-pathogen interaction	4
bna03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	9
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	6
sot03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	4
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	15
nta03008	Ribosome biogenesis in eukaryotes	2
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	3
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	3
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	3
zma03010	Ribosome	2
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	5
tae03420	Nucleotide excision repair	5
tae03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04145	Phagosome	3
sbi04517	IgSF CAM signaling	3
sbi04814	Motor proteins	3
sbi00520	Amino sugar and nucleotide sugar metabolism	2
sbi01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03050	Proteasome	7

Expression

Expression pattern

Entrez Gene ID^*

25497346

11436305

100796704

100305467

18109442

7485193

819991

103835157

103851541

100246039

100263981

107960836

107952135

106365965

106439949

102608923

102627364

101245474

101254436

102587142

102581514

107759364

142161681

4343831

4352279

542725

100284207

123134221

123097872

123403078

123400027

8075292

110434104

100842305

5720095

5727272

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Species	mtr	gma	ppo	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	5	2	3	3	3	3	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 11438254 (mtr-u.5 coexpression data)

Top 50 enrichment test to 11438254 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**