ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
mtr-u.5	11444771	BRCA1-associated RING domain protein 1
mtr-r.5	11444771	BRCA1-associated RING domain protein 1
mtr-m.5	11444771	BRCA1-associated RING domain protein 1
mtr-u.5	25486045	protein BREAST CANCER SUSCEPTIBILITY 1 homolog
gma-u.5	100306420	BRCA1 carboxy-terminal domain-containing protein
gma-u.5	100789372	BRCT domain-containing protein
gma-u.5	100804958	BRCT domain-containing protein
ppo-u.5	7474513	BRCA1-associated RING domain protein 1
ppo-u.5	7470812	protein BREAST CANCER SUSCEPTIBILITY 1 homolog
ath-u.5	BRCA1	breast cancer susceptibility1
ath-u.5	BARD1	breast cancer associated RING 1
bra-r.6	103873167	uncharacterized LOC103873167
bra-r.6	103834209	protein BREAST CANCER SUSCEPTIBILITY 1 homolog
bra-r.6	103843674	BRCA1-associated RING domain protein 1
vvi-u.5	100253255	BRCA1-associated RING domain protein 1
ghi-r.1	107920972	protein BREAST CANCER SUSCEPTIBILITY 1 homolog
ghi-r.1	107925947	BRCA1-associated RING domain protein 1
ghi-r.1	107937661	BRCA1-associated RING domain protein 1
bna-r.1	106369254	BRCA1-associated RING domain protein 1
cit-r.1	102626843	protein BREAST CANCER SUSCEPTIBILITY 1 homolog
cit-r.1	102622461	BRCA1-associated RING domain protein 1
sly-u.5	101256694	protein BREAST CANCER SUSCEPTIBILITY 1 homolog
sly-u.5	101264126	BRCA1-associated RING domain protein 1
sly-u.5	101256776	BRCA1-associated RING domain protein 1
sot-r.1	102585833	BRCA1-associated RING domain protein 1-like
sot-r.1	102579131	protein BREAST CANCER SUSCEPTIBILITY 1 homolog
sot-r.1	102589099	BRCA1-associated RING domain protein 1
nta-r.1	107822351	protein BREAST CANCER SUSCEPTIBILITY 1 homolog
nta-r.1	107821036	protein BREAST CANCER SUSCEPTIBILITY 1 homolog
nta-r.1	107820519	BRCA1-associated RING domain protein 1
osa-u.5	4336384	BRCA1-associated RING domain protein 1
osa-u.5	4339293	protein BREAST CANCER SUSCEPTIBILITY 1 homolog
osa-u.5	107276010	BRCA1-associated RING domain protein 1
zma-u.5	103630583	uncharacterized LOC103630583
zma-u.5	100281664	ATBRCA1
tae-r.2	123139632	protein BREAST CANCER SUSCEPTIBILITY 1 homolog
tae-r.2	123184872	protein BREAST CANCER SUSCEPTIBILITY 1 homolog
hvu-r.1	123416662	protein BREAST CANCER SUSCEPTIBILITY 1 homolog
hvu-r.1	123427227	BRCA1-associated RING domain protein 1
sbi-r.1	8067490	protein BREAST CANCER SUSCEPTIBILITY 1 homolog
sbi-r.1	8077022	BRCA1-associated RING domain protein 1
sbi-r.1	8064471	protein BREAST CANCER SUSCEPTIBILITY 1 homolog
bdi-r.1	100842826	BRCA1-associated RING domain protein 1
bdi-r.1	100835205	BRCA1-associated RING domain protein 1
bdi-r.1	100842545	protein BREAST CANCER SUSCEPTIBILITY 1 homolog
cre-r.1	CHLRE_03g174600v5	uncharacterized protein
cre-r.1	CHLRE_07g334650v5	uncharacterized protein
cre-r.1	CHLRE_16g672350v5	uncharacterized protein

Top 50 coexpressed genes to 11444771 (mtr-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 11444771 (mtr-u.5 coexpression data)

CoexMap"11444771"

[Cytoscape]

Annotation

functional annotation

KEGG

mtr03440 [list] [network] Homologous recombination (67 genes)

GO BP

GO:0000724 [list] [network] double-strand break repair via homologous recombination	(67 genes)	IEA
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II	(161 genes)	IEA

GO CC

GO:0031436 [list] [network] BRCA1-BARD1 complex	(5 genes)	IEA
GO:0070531 [list] [network] BRCA1-A complex	(8 genes)	IEA

GO MF

GO:0004842 [list] [network] ubiquitin-protein transferase activity	(358 genes)	IEA
GO:0046872 [list] [network] metal ion binding	(2334 genes)	IEA

Protein

XP_003625346.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, cyto 1, vacu 1, pero 1, cyto_pero 1

(predict for XP_003625346.1)

Subcellular
localization
TargetP

other 7

(predict for XP_003625346.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 11444771	mtr-r.5 for 11444771	mtr-m.5 for 11444771	mtr-u.5 for 25486045	gma-u.5 for 100306420	gma-u.5 for 100789372	gma-u.5 for 100804958	ppo-u.5 for 7474513	ppo-u.5 for 7470812	ath-u.5 for BRCA1	ath-u.5 for BARD1	bra-r.6 for 103873167	bra-r.6 for 103834209	bra-r.6 for 103843674	vvi-u.5 for 100253255	ghi-r.1 for 107920972	ghi-r.1 for 107925947	ghi-r.1 for 107937661	bna-r.1 for 106369254	cit-r.1 for 102626843	cit-r.1 for 102622461	sly-u.5 for 101256694	sly-u.5 for 101264126	sly-u.5 for 101256776	sot-r.1 for 102585833	sot-r.1 for 102579131	sot-r.1 for 102589099	nta-r.1 for 107822351	nta-r.1 for 107821036	nta-r.1 for 107820519	osa-u.5 for 4336384	osa-u.5 for 4339293	osa-u.5 for 107276010	zma-u.5 for 103630583	zma-u.5 for 100281664	tae-r.2 for 123139632	tae-r.2 for 123184872	hvu-r.1 for 123416662	hvu-r.1 for 123427227	sbi-r.1 for 8067490	sbi-r.1 for 8077022	sbi-r.1 for 8064471	bdi-r.1 for 100842826	bdi-r.1 for 100835205	bdi-r.1 for 100842545	cre-r.1 for CHLRE_03g174600v5	cre-r.1 for CHLRE_07g334650v5	cre-r.1 for CHLRE_16g672350v5

Ortholog

Ortholog ID: 1586

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

BRCA1

BARD1

Function^*