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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100306420   BRCA1 carboxy-terminal domain-containing protein 
 gma-r.7   100306420   BRCA1 carboxy-terminal domain-containing protein 
 gma-u.5   100804958   BRCT domain-containing protein 
 gma-u.5   100789372   BRCT domain-containing protein 
 gma-u.5   100784883   BRCA1-associated RING domain protein 1 
 mtr-u.5   25486045   protein BREAST CANCER SUSCEPTIBILITY 1 homolog 
 mtr-u.5   11444771   BRCA1-associated RING domain protein 1 
 ppo-u.5   7474513   BRCA1-associated RING domain protein 1 
 ppo-u.5   7470812   protein BREAST CANCER SUSCEPTIBILITY 1 homolog 
 ath-u.5   BRCA1   breast cancer susceptibility1 
 ath-u.5   BARD1   breast cancer associated RING 1 
 vvi-u.5   100253255   BRCA1-associated RING domain protein 1 
 sly-u.5   101249153   BRCA1-associated RING domain protein 1-like 
 sly-u.5   101256694   protein BREAST CANCER SUSCEPTIBILITY 1 homolog 
 osa-u.5   107276010   BRCA1-associated RING domain protein 1 
 osa-u.5   4339293   protein BREAST CANCER SUSCEPTIBILITY 1 homolog 
 osa-u.5   4336384   BRCA1-associated RING domain protein 1 
 zma-u.5   103630583   uncharacterized LOC103630583 
 zma-u.5   100281664   ATBRCA1 

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Top 50 coexpressed genes to 100306420 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100306420 (gma-u.5 coexpression data)

CoexMap"100306420"


gmaLOC100306420 | Entrez gene ID : 100306420      
Species gma mtr ppo ath vvi sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 5 2 2 2 1 2 3 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03440 [list] [network] Homologous recombination (74 genes)
GO BP
GO:0045717 [list] [network] negative regulation of fatty acid biosynthetic process  (6 genes)  IEA  
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (164 genes)  IEA  
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (294 genes)  IEA  
GO CC
GO:0031436 [list] [network] BRCA1-BARD1 complex  (5 genes)  IEA  
GO:0070531 [list] [network] BRCA1-A complex  (10 genes)  IEA  
GO:0005886 [list] [network] plasma membrane  (1870 genes)  IEA  
GO MF
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (548 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (3089 genes)  IEA  
Protein NP_001238572.2 [sequence] [blastp]
XP_006603640.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 3,  cyto 3  (predict for NP_001238572.2)
nucl 4,  cyto 3,  chlo 2,  cyto_pero 2  (predict for XP_006603640.1)
Subcellular
localization
TargetP
other 7,  scret 6  (predict for NP_001238572.2)
other 7,  scret 6  (predict for XP_006603640.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100306420
gma-r.7
for
100306420
gma-u.5
for
100804958
gma-u.5
for
100789372
gma-u.5
for
100784883
mtr-u.5
for
25486045
mtr-u.5
for
11444771
ppo-u.5
for
7474513
ppo-u.5
for
7470812
ath-u.5
for
BRCA1
ath-u.5
for
BARD1
vvi-u.5
for
100253255
sly-u.5
for
101249153
sly-u.5
for
101256694
osa-u.5
for
107276010
osa-u.5
for
4339293
osa-u.5
for
4336384
zma-u.5
for
103630583
zma-u.5
for
100281664


Ortholog ID: 1586
Species gma gma mtr mtr ppo ppo ath ath bra bra vvi ghi ghi bna bna cit cit sly sly sot sot nta nta osa osa zma tae hvu hvu sbi bdi bdi cre cre
Symbol LOC100804958 LOC100789372 LOC11444771 LOC25486045 LOC7474513 LOC7470812 BARD1 BRCA1 LOC103858702 LOC103843674 LOC100253255 LOC107944716 LOC107920972 LOC106389897 LOC106360996 LOC102626843 LOC102622461 LOC101256776 LOC101249153 LOC102589099 LOC102579131 LOC107822351 LOC107773243 LOC4336384 LOC4339293 LOC100281664 LOC123139632 LOC123416662 LOC123427227 LOC8067490 LOC100842545 LOC100842826 CHLRE_07g334650v5 CHLRE_16g672350v5
Function* BRCT domain-containing protein BRCT domain-containing protein BRCA1-associated RING domain protein 1 protein BREAST CANCER SUSCEPTIBILITY 1 homolog BRCA1-associated RING domain protein 1 protein BREAST CANCER SUSCEPTIBILITY 1 homolog breast cancer associated RING 1 breast cancer susceptibility1 protein BREAST CANCER SUSCEPTIBILITY 1 homolog BRCA1-associated RING domain protein 1 BRCA1-associated RING domain protein 1 uncharacterized LOC107944716 protein BREAST CANCER SUSCEPTIBILITY 1 homolog protein BREAST CANCER SUSCEPTIBILITY 1 homolog protein BREAST CANCER SUSCEPTIBILITY 1 homolog protein BREAST CANCER SUSCEPTIBILITY 1 homolog BRCA1-associated RING domain protein 1 BRCA1-associated RING domain protein 1 BRCA1-associated RING domain protein 1-like BRCA1-associated RING domain protein 1 protein BREAST CANCER SUSCEPTIBILITY 1 homolog protein BREAST CANCER SUSCEPTIBILITY 1 homolog BRCA1-associated RING domain protein 1-like BRCA1-associated RING domain protein 1 protein BREAST CANCER SUSCEPTIBILITY 1 homolog ATBRCA1 protein BREAST CANCER SUSCEPTIBILITY 1 homolog protein BREAST CANCER SUSCEPTIBILITY 1 homolog BRCA1-associated RING domain protein 1 protein BREAST CANCER SUSCEPTIBILITY 1 homolog protein BREAST CANCER SUSCEPTIBILITY 1 homolog BRCA1-associated RING domain protein 1 uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00240 Pyrimidine metabolism 4
gma01232 Nucleotide metabolism 4
gma03030 DNA replication 3
gma03440 Homologous recombination 3
gma00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03440 Homologous recombination 3
gma00240 Pyrimidine metabolism 3
gma01232 Nucleotide metabolism 3
gma03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00230 Purine metabolism 5
mtr00240 Pyrimidine metabolism 5
mtr00480 Glutathione metabolism 5
mtr01232 Nucleotide metabolism 5
mtr03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 10
ppo03440 Homologous recombination 4
ppo03410 Base excision repair 3
ppo03420 Nucleotide excision repair 3
ppo03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 8
ppo00230 Purine metabolism 3
ppo00240 Pyrimidine metabolism 3
ppo00480 Glutathione metabolism 3
ppo01232 Nucleotide metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 4
ath03430 Mismatch repair 3
ath03440 Homologous recombination 3
ath03420 Nucleotide excision repair 2
ath03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 7
ath03030 DNA replication 5
ath03420 Nucleotide excision repair 4
ath03460 Fanconi anemia pathway 4
ath03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 7
bra03440 Homologous recombination 4
bra03420 Nucleotide excision repair 3
bra03430 Mismatch repair 3
bra03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 5
bra03420 Nucleotide excision repair 3
bra03430 Mismatch repair 3
bra03440 Homologous recombination 3
bra00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03420 Nucleotide excision repair 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 2
ghi04814 Motor proteins 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00240 Pyrimidine metabolism 8
bna01232 Nucleotide metabolism 8
bna03440 Homologous recombination 5
bna03460 Fanconi anemia pathway 5
bna00230 Purine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00240 Pyrimidine metabolism 8
bna01232 Nucleotide metabolism 8
bna03440 Homologous recombination 5
bna03460 Fanconi anemia pathway 4
bna00230 Purine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03440 Homologous recombination 2
cit00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03440 Homologous recombination 2
sly00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 4
sot03410 Base excision repair 2
sot03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
sot00230 Purine metabolism 2
sot00240 Pyrimidine metabolism 2
sot00480 Glutathione metabolism 2
sot01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03460 Fanconi anemia pathway 2
nta03440 Homologous recombination 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 6
nta03440 Homologous recombination 4
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 7
osa03440 Homologous recombination 2
osa03082 ATP-dependent chromatin remodeling 2
osa03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 6
zma03430 Mismatch repair 3
zma03420 Nucleotide excision repair 2
zma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04016 MAPK signaling pathway - plant 2
hvu03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 7
sbi03440 Homologous recombination 3
sbi03430 Mismatch repair 3
sbi03420 Nucleotide excision repair 2
sbi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04814 Motor proteins 6
bdi00270 Cysteine and methionine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 6
bdi03440 Homologous recombination 3
bdi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 8
cre03420 Nucleotide excision repair 2
cre03430 Mismatch repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100804958 100789372 11444771 25486045 7474513 7470812 839329 827854 103858702 103843674 100253255 107944716 107920972 106389897 106360996 102626843 102622461 101256776 101249153 102589099 102579131 107822351 107773243 4336384 4339293 100281664 123139632 123416662 123427227 8067490 100842545 100842826 5725710 5721402
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