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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   120577626   putative pentatricopeptide repeat-containing protein At2g02150 
 mtr-r.5   120577626   putative pentatricopeptide repeat-containing protein At2g02150 
 gma-u.5   100786756   putative pentatricopeptide repeat-containing protein At2g02150 
 ppo-u.5   7459076   putative pentatricopeptide repeat-containing protein At2g02150 
 ath-u.5   EMB2794   Tetratricopeptide repeat (TPR)-like superfamily protein 
 bra-r.6   103827529   putative pentatricopeptide repeat-containing protein At2g02150 
 vvi-u.5   100241074   putative pentatricopeptide repeat-containing protein At2g02150 
 ghi-r.1   107946298   putative pentatricopeptide repeat-containing protein At2g02150 
 ghi-r.1   107918111   putative pentatricopeptide repeat-containing protein At2g02150 
 bna-r.1   106451699   putative pentatricopeptide repeat-containing protein At2g02150 
 bna-r.1   106369354   putative pentatricopeptide repeat-containing protein At2g02150 
 cit-r.1   127899432   putative pentatricopeptide repeat-containing protein At2g02150 
 sly-u.5   101244724   pentatricopeptide repeat-containing protein 
 nta-r.1   107771998   uncharacterized LOC107771998 
 nta-r.1   107793694   uncharacterized LOC107793694 

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Top 50 coexpressed genes to 120577626 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 120577626 (mtr-u.5 coexpression data)

CoexMap"120577626"


mtrLOC120577626 | Entrez gene ID : 120577626    
Species mtr gma ppo ath bra vvi ghi bna cit sly nta sot bdi osa tae zma cre sbi hvu
Paralog 2 1 1 1 1 1 2 2 1 1 2 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003729 [list] [network] mRNA binding  (294 genes)  IEA  
GO:0005515 [list] [network] protein binding  (5045 genes)  IEA  
Protein XP_039685257.1 [sequence] [blastp]
XP_039685258.1 [sequence] [blastp]
XP_039685259.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  plas 1,  golg 1,  cyto_mito 1,  nucl_plas 1,  cysk_plas 1,  E.R._plas 1,  cyto_plas 1  (predict for XP_039685257.1)
chlo 7,  plas 1,  golg 1,  cyto_mito 1,  nucl_plas 1,  cysk_plas 1,  E.R._plas 1,  cyto_plas 1  (predict for XP_039685258.1)
chlo 4,  E.R. 2,  plas 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for XP_039685259.1)
Subcellular
localization
TargetP
mito 6,  chlo 5  (predict for XP_039685257.1)
mito 6,  chlo 5  (predict for XP_039685258.1)
scret 7,  other 4  (predict for XP_039685259.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
120577626
mtr-r.5
for
120577626
gma-u.5
for
100786756
ppo-u.5
for
7459076
ath-u.5
for
EMB2794
bra-r.6
for
103827529
vvi-u.5
for
100241074
ghi-r.1
for
107946298
ghi-r.1
for
107918111
bna-r.1
for
106451699
bna-r.1
for
106369354
cit-r.1
for
127899432
sly-u.5
for
101244724
nta-r.1
for
107771998
nta-r.1
for
107793694


Ortholog ID: 13415
Species mtr gma ppo ath bra vvi ghi ghi bna bna cit sly nta nta
Symbol LOC120577626 LOC100786756 LOC7459076 EMB2794 LOC103827529 LOC100241074 LOC107946298 LOC107918111 LOC106451699 LOC106369354 LOC127899432 LOC101244724 LOC107771998 LOC107793694
Function* putative pentatricopeptide repeat-containing protein At2g02150 putative pentatricopeptide repeat-containing protein At2g02150 putative pentatricopeptide repeat-containing protein At2g02150 Tetratricopeptide repeat (TPR)-like superfamily protein putative pentatricopeptide repeat-containing protein At2g02150 putative pentatricopeptide repeat-containing protein At2g02150 putative pentatricopeptide repeat-containing protein At2g02150 putative pentatricopeptide repeat-containing protein At2g02150 putative pentatricopeptide repeat-containing protein At2g02150 putative pentatricopeptide repeat-containing protein At2g02150 putative pentatricopeptide repeat-containing protein At2g02150 pentatricopeptide repeat-containing protein uncharacterized LOC107771998 uncharacterized LOC107793694
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 7
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 2
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
nta03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 120577626 100786756 7459076 814746 103827529 100241074 107946298 107918111 106451699 106369354 127899432 101244724 107771998 107793694
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