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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   120579890   DNA-directed RNA polymerase subunit beta'' 
 mtr-r.5   120579890   DNA-directed RNA polymerase subunit beta'' 
 mtr-u.5   rpoC2   RNA polymerase beta'' subunit 
 gma-u.5   rpoC2   RNA polymerase beta'' chain 
 ppo-u.5   rpoC2   RNA polymerase beta'' subunit 
 ath-u.5   rpoC2   RNA polymerase beta'' subunit 
 vvi-u.5   rpoC2   RNA polymerase beta'' chain 
 sly-u.5   rpoC2   RNA polymerase beta' subunit 
 osa-u.5   rpoC2   RNA polymerase beta'' subunit 
 zma-u.5   109943315   DNA-directed RNA polymerase subunit beta'-like 

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Top 50 coexpressed genes to 120579890 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 120579890 (mtr-u.5 coexpression data)

CoexMap"120579890"


mtrLOC120579890 | Entrez gene ID : 120579890    
Species mtr gma ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG mtr03020 [list] [network] RNA polymerase (74 genes)
GO BP
GO:0006351 [list] [network] DNA-templated transcription  (265 genes)  IEA  
GO CC
GO MF
GO:0003899 [list] [network] DNA-directed RNA polymerase activity  (21 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (2104 genes)  IEA  
Protein XP_039688567.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  chlo 1,  plas 1,  cysk 1,  cysk_plas 1  (predict for XP_039688567.1)
Subcellular
localization
TargetP
other 4  (predict for XP_039688567.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
120579890

.
mtr-r.5
for
120579890

.
mtr-u.5
for
rpoC2

.
gma-u.5
for
rpoC2

.
ppo-u.5
for
rpoC2

.
ath-u.5
for
rpoC2

.
vvi-u.5
for
rpoC2

.
sly-u.5
for
rpoC2

.
osa-u.5
for
rpoC2

.
zma-u.5
for
109943315

.


Ortholog ID: 2056
Species ath gma sly osa zma vvi ppo mtr mtr tae ghi ghi sbi sbi sot cit bdi nta
Symbol rpoC2 rpoC2 rpoC2 rpoC2 LOC109943315 rpoC2 rpoC2 LOC120579890 rpoC2 LOC123081044 LOC121223753 rpoC2 LOC8074931 rpoC2 rpoC2 rpoC2 LOC106865719 rpoC2
Function* RNA polymerase beta'' subunit RNA polymerase beta'' chain RNA polymerase beta' subunit RNA polymerase beta'' subunit DNA-directed RNA polymerase subunit beta'-like RNA polymerase beta'' chain RNA polymerase beta'' subunit DNA-directed RNA polymerase subunit beta'' RNA polymerase beta'' subunit DNA-directed RNA polymerase subunit beta''-like DNA-directed RNA polymerase subunit beta''-like RNA polymerase beta'' chain DNA-directed RNA polymerase subunit beta'' RNA polymerase beta'' subunit RNA polymerase beta'' subunit RNA polymerase beta'' subunit DNA-directed RNA polymerase subunit beta'' RNA polymerase beta'' chain
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 4
ath03020 RNA polymerase 3
ath00190 Oxidative phosphorylation 3
ath00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 8
gma00190 Oxidative phosphorylation 5
gma03020 RNA polymerase 4
gma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 8
sly03020 RNA polymerase 4
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 8
osa00190 Oxidative phosphorylation 7
osa03010 Ribosome 7
osa03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00190 Oxidative phosphorylation 9
zma03020 RNA polymerase 7
zma00195 Photosynthesis 7
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00190 Oxidative phosphorylation 8
vvi00195 Photosynthesis 7
vvi03010 Ribosome 5
vvi03020 RNA polymerase 3
vvi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 8
ppo03020 RNA polymerase 5
ppo00190 Oxidative phosphorylation 4
ppo00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 7
mtr00190 Oxidative phosphorylation 4
mtr03020 RNA polymerase 4
mtr00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 7
mtr00190 Oxidative phosphorylation 4
mtr03020 RNA polymerase 4
mtr00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 13
tae00190 Oxidative phosphorylation 8
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 3
ghi03010 Ribosome 2
ghi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 3
ghi03020 RNA polymerase 3
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 8
sbi03010 Ribosome 5
sbi03020 RNA polymerase 4
sbi00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 8
sbi03020 RNA polymerase 5
sbi03010 Ribosome 4
sbi00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 10
sot00195 Photosynthesis 3
sot03020 RNA polymerase 3
sot00190 Oxidative phosphorylation 2
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00190 Oxidative phosphorylation 8
cit00195 Photosynthesis 7
cit03020 RNA polymerase 3
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 4
bdi03020 RNA polymerase 3
bdi00630 Glyoxylate and dicarboxylate metabolism 2
bdi00710 Carbon fixation by Calvin cycle 2
bdi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 6
nta00190 Oxidative phosphorylation 5
nta03020 RNA polymerase 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844785 3989293 3950457 3131434 109943315 4025097 4929643 120579890 5333185 123081044 121223753 3989195 8074931 4549110 4099930 4271233 106865719 800532
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