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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   102660535   pentatricopeptide repeat-containing protein At5g12100, mitochondrial 
 gma-u.5   100786292   pentatricopeptide repeat-containing protein At5g12100, mitochondrial 
 mtr-u.5   25499387   pentatricopeptide repeat-containing protein At5g12100, mitochondrial 
 ppo-u.5   7469483   pentatricopeptide repeat-containing protein At5g12100, mitochondrial 
 ath-u.5   AT5G12100   pentatricopeptide (PPR) repeat-containing protein 
 vvi-u.5   100854858   pentatricopeptide repeat-containing protein At5g12100, mitochondrial 
 ghi-r.1   107905353   pentatricopeptide repeat-containing protein At5g12100, mitochondrial 
 ghi-r.1   121214029   pentatricopeptide repeat-containing protein At5g12100, mitochondrial 
 bna-r.1   106430900   pentatricopeptide repeat-containing protein At5g12100, mitochondrial-like 
 bna-r.1   106424496   pentatricopeptide repeat-containing protein At5g12100, mitochondrial 
 cit-r.1   102608453   pentatricopeptide repeat-containing protein At5g12100, mitochondrial 
 sly-u.5   101256754   pentatricopeptide repeat-containing protein At5g12100, mitochondrial 
 sot-r.1   102596902   pentatricopeptide repeat-containing protein At5g12100, mitochondrial 
 nta-r.1   107771662   uncharacterized LOC107771662 
 nta-r.1   107795287   uncharacterized LOC107795287 
 nta-r.1   107798438   uncharacterized LOC107798438 

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Top 50 coexpressed genes to 102660535 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102660535 (gma-u.5 coexpression data)

CoexMap"121172636"


gmaLOC121172636 | Entrez gene ID : 121172636    
Species gma mtr ppo ath vvi ghi bna cit sly sot nta bdi osa tae zma cre sbi bra hvu
Paralog 2 1 1 1 1 2 2 1 1 1 3 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003729 [list] [network] mRNA binding  (563 genes)  IEA  
GO:0005515 [list] [network] protein binding  (7243 genes)  IEA  
Protein XP_040868842.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 8,  nucl 1,  mito 1,  vacu 1  (predict for XP_040868842.1)
Subcellular
localization
TargetP
other 7  (predict for XP_040868842.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
102660535
gma-u.5
for
100786292
mtr-u.5
for
25499387
ppo-u.5
for
7469483
ath-u.5
for
AT5G12100
vvi-u.5
for
100854858
ghi-r.1
for
107905353
ghi-r.1
for
121214029
bna-r.1
for
106430900
bna-r.1
for
106424496
cit-r.1
for
102608453
sly-u.5
for
101256754
sot-r.1
for
102596902
nta-r.1
for
107771662
nta-r.1
for
107795287
nta-r.1
for
107798438


Ortholog ID: 12674
Species gma gma mtr ppo ath vvi ghi ghi bna bna cit sly sot nta nta nta
Symbol LOC102660535 LOC100786292 LOC25499387 LOC7469483 AT5G12100 LOC100854858 LOC107905353 LOC121214029 LOC106430900 LOC106424496 LOC102608453 LOC101256754 LOC102596902 LOC107771662 LOC107795287 LOC107798438
Function* pentatricopeptide repeat-containing protein At5g12100, mitochondrial pentatricopeptide repeat-containing protein At5g12100, mitochondrial pentatricopeptide repeat-containing protein At5g12100, mitochondrial pentatricopeptide repeat-containing protein At5g12100, mitochondrial pentatricopeptide (PPR) repeat-containing protein pentatricopeptide repeat-containing protein At5g12100, mitochondrial pentatricopeptide repeat-containing protein At5g12100, mitochondrial pentatricopeptide repeat-containing protein At5g12100, mitochondrial pentatricopeptide repeat-containing protein At5g12100, mitochondrial-like pentatricopeptide repeat-containing protein At5g12100, mitochondrial pentatricopeptide repeat-containing protein At5g12100, mitochondrial pentatricopeptide repeat-containing protein At5g12100, mitochondrial pentatricopeptide repeat-containing protein At5g12100, mitochondrial uncharacterized LOC107771662 uncharacterized LOC107795287 uncharacterized LOC107798438
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03015 mRNA surveillance pathway 4
ath03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna03250 Viral life cycle - HIV-1 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102660535 100786292 25499387 7469483 831083 100854858 107905353 121214029 106430900 106424496 102608453 101256754 102596902 107771662 107795287 107798438
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