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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   121204492   pentatricopeptide repeat-containing protein At1g02060, chloroplastic 
 ath-u.5   AT1G02060   Tetratricopeptide repeat (TPR)-like superfamily protein 
 vvi-u.5   100246273   pentatricopeptide repeat-containing protein At1g02060, chloroplastic 
 ppo-u.5   18105147   pentatricopeptide repeat-containing protein At1g02060, chloroplastic 
 mtr-u.5   11436788   pentatricopeptide repeat-containing protein At1g02060, chloroplastic 
 sly-u.5   101250782   pentatricopeptide repeat-containing protein At1g02060, chloroplastic 
 osa-u.5   4328126   pentatricopeptide repeat-containing protein At1g02060, chloroplastic 
 zma-u.5   100383463   Pentatricopeptide repeat-containing protein chloroplastic 

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Top 50 coexpressed genes to 121204492 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 121204492 (ghi-r.1 coexpression data)

CoexMap"121204492"


ghiLOC121204492 | Entrez gene ID : 121204492    
Species ghi ath vvi ppo mtr sly osa zma hvu bna cit bra sbi bdi nta gma tae cre sot
Paralog 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003729 [list] [network] mRNA binding  (890 genes)  IEA  
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_040930274.1 [sequence] [blastp]
XP_040930275.1 [sequence] [blastp]
XP_040930276.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  cyto 3  (predict for XP_040930274.1)
chlo 6,  cyto 3  (predict for XP_040930275.1)
chlo 6,  cyto 3  (predict for XP_040930276.1)
Subcellular
localization
TargetP
mito 6,  other 4  (predict for XP_040930274.1)
mito 6,  other 4  (predict for XP_040930275.1)
mito 6,  other 4  (predict for XP_040930276.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
121204492
ath-u.5
for
AT1G02060
vvi-u.5
for
100246273
ppo-u.5
for
18105147
mtr-u.5
for
11436788
sly-u.5
for
101250782
osa-u.5
for
4328126
zma-u.5
for
100383463


Ortholog ID: 11482
Species ghi ghi ath bra bna bna vvi ppo mtr sly sot nta nta osa zma tae tae hvu sbi bdi
Symbol LOC121219844 LOC121204492 AT1G02060 LOC103865636 LOC106447417 LOC106402410 LOC100246273 LOC18105147 LOC11436788 LOC101250782 LOC102593717 LOC107780483 LOC107781339 LOC4328126 LOC100383463 LOC123135856 LOC123143376 LOC123402101 LOC8054270 LOC100825426
Function* pentatricopeptide repeat-containing protein At1g02060, chloroplastic pentatricopeptide repeat-containing protein At1g02060, chloroplastic Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At1g02060, chloroplastic pentatricopeptide repeat-containing protein At1g02060, chloroplastic pentatricopeptide repeat-containing protein At1g02060, chloroplastic pentatricopeptide repeat-containing protein At1g02060, chloroplastic pentatricopeptide repeat-containing protein At1g02060, chloroplastic pentatricopeptide repeat-containing protein At1g02060, chloroplastic pentatricopeptide repeat-containing protein At1g02060, chloroplastic pentatricopeptide repeat-containing protein At1g02060, chloroplastic pentatricopeptide repeat-containing protein At1g02060, chloroplastic-like pentatricopeptide repeat-containing protein At1g02060, chloroplastic-like pentatricopeptide repeat-containing protein At1g02060, chloroplastic Pentatricopeptide repeat-containing protein chloroplastic pentatricopeptide repeat-containing protein At1g02060, chloroplastic pentatricopeptide repeat-containing protein At1g02060, chloroplastic pentatricopeptide repeat-containing protein At1g02060, chloroplastic pentatricopeptide repeat-containing protein At1g02060, chloroplastic pentatricopeptide repeat-containing protein At1g02060, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 2
mtr03015 mRNA surveillance pathway 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
tae02010 ABC transporters 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 121219844 121204492 839279 103865636 106447417 106402410 100246273 18105147 11436788 101250782 102593717 107780483 107781339 4328126 100383463 123135856 123143376 123402101 8054270 100825426
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