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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123143376   pentatricopeptide repeat-containing protein At1g02060, chloroplastic 
 tae-r.2   123135856   pentatricopeptide repeat-containing protein At1g02060, chloroplastic 
 hvu-r.1   123402101   pentatricopeptide repeat-containing protein At1g02060, chloroplastic 
 bdi-r.1   100825426   pentatricopeptide repeat-containing protein At1g02060, chloroplastic 
 osa-u.5   4328126   pentatricopeptide repeat-containing protein At1g02060, chloroplastic 
 zma-u.5   100383463   Pentatricopeptide repeat-containing protein chloroplastic 
 sbi-r.1   8054270   pentatricopeptide repeat-containing protein At1g02060, chloroplastic 
 ath-u.5   AT1G02060   Tetratricopeptide repeat (TPR)-like superfamily protein 
 sly-u.5   101250782   pentatricopeptide repeat-containing protein At1g02060, chloroplastic 
 bra-r.6   103865636   pentatricopeptide repeat-containing protein At1g02060, chloroplastic 
 vvi-u.5   100246273   pentatricopeptide repeat-containing protein At1g02060, chloroplastic 
 ppo-u.5   18105147   pentatricopeptide repeat-containing protein At1g02060, chloroplastic 
 mtr-u.5   11436788   pentatricopeptide repeat-containing protein At1g02060, chloroplastic 
 ghi-r.1   121204492   pentatricopeptide repeat-containing protein At1g02060, chloroplastic 
 ghi-r.1   121219844   pentatricopeptide repeat-containing protein At1g02060, chloroplastic 
 bna-r.1   106402410   pentatricopeptide repeat-containing protein At1g02060, chloroplastic 
 bna-r.1   106447417   pentatricopeptide repeat-containing protein At1g02060, chloroplastic 
 sot-r.1   102593717   pentatricopeptide repeat-containing protein At1g02060, chloroplastic 
 nta-r.1   107780483   pentatricopeptide repeat-containing protein At1g02060, chloroplastic-like 
 nta-r.1   107781339   pentatricopeptide repeat-containing protein At1g02060, chloroplastic-like 

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Top 50 coexpressed genes to 123143376 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123143376 (tae-r.2 coexpression data)

CoexMap"123143376"


taeLOC123143376 | Entrez gene ID : 123143376    
Species tae hvu bdi osa zma sbi ath sly bra vvi ppo mtr ghi bna sot nta gma cre cit
Paralog 2 1 1 1 1 1 1 1 1 1 1 1 2 2 1 2 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0007005 [list] [network] mitochondrion organization  (254 genes)  IEA  
GO:0006396 [list] [network] RNA processing  (1836 genes)  IEA  
GO CC
GO:0005739 [list] [network] mitochondrion  (1872 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (862 genes)  IEA  
GO:0005515 [list] [network] protein binding  (16249 genes)  IEA  
Protein XP_044418229.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_044418229.1)
Subcellular
localization
TargetP
other 6,  chlo 4  (predict for XP_044418229.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123143376
tae-r.2
for
123135856
hvu-r.1
for
123402101
bdi-r.1
for
100825426
osa-u.5
for
4328126
zma-u.5
for
100383463
sbi-r.1
for
8054270
ath-u.5
for
AT1G02060
sly-u.5
for
101250782
bra-r.6
for
103865636
vvi-u.5
for
100246273
ppo-u.5
for
18105147
mtr-u.5
for
11436788
ghi-r.1
for
121204492
ghi-r.1
for
121219844
bna-r.1
for
106402410
bna-r.1
for
106447417
sot-r.1
for
102593717
nta-r.1
for
107780483
nta-r.1
for
107781339


Ortholog ID: 11482
Species tae tae hvu bdi osa zma sbi ath sly bra vvi ppo mtr ghi ghi bna bna sot nta nta
Symbol LOC123143376 LOC123135856 LOC123402101 LOC100825426 LOC4328126 LOC100383463 LOC8054270 AT1G02060 LOC101250782 LOC103865636 LOC100246273 LOC18105147 LOC11436788 LOC121204492 LOC121219844 LOC106402410 LOC106447417 LOC102593717 LOC107780483 LOC107781339
Function* pentatricopeptide repeat-containing protein At1g02060, chloroplastic pentatricopeptide repeat-containing protein At1g02060, chloroplastic pentatricopeptide repeat-containing protein At1g02060, chloroplastic pentatricopeptide repeat-containing protein At1g02060, chloroplastic pentatricopeptide repeat-containing protein At1g02060, chloroplastic Pentatricopeptide repeat-containing protein chloroplastic pentatricopeptide repeat-containing protein At1g02060, chloroplastic Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At1g02060, chloroplastic pentatricopeptide repeat-containing protein At1g02060, chloroplastic pentatricopeptide repeat-containing protein At1g02060, chloroplastic pentatricopeptide repeat-containing protein At1g02060, chloroplastic pentatricopeptide repeat-containing protein At1g02060, chloroplastic pentatricopeptide repeat-containing protein At1g02060, chloroplastic pentatricopeptide repeat-containing protein At1g02060, chloroplastic pentatricopeptide repeat-containing protein At1g02060, chloroplastic pentatricopeptide repeat-containing protein At1g02060, chloroplastic pentatricopeptide repeat-containing protein At1g02060, chloroplastic pentatricopeptide repeat-containing protein At1g02060, chloroplastic-like pentatricopeptide repeat-containing protein At1g02060, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
tae02010 ABC transporters 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 2
mtr03015 mRNA surveillance pathway 2
mtr03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123143376 123135856 123402101 100825426 4328126 100383463 8054270 839279 101250782 103865636 100246273 18105147 11436788 121204492 121219844 106402410 106447417 102593717 107780483 107781339
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