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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   121208253   ATP-dependent RNA helicase DEAH11, chloroplastic 
 ath-u.5   AT4G01020   helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein 
 ath-u.5   AT5G10370   helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein 
 gma-u.5   HELRP   ATP-dependent RNA helicase DEAH12, chloroplastic 
 gma-u.5   100806464   ATP-dependent RNA helicase DEAH12, chloroplastic 
 vvi-u.5   100254070   ATP-dependent RNA helicase DEAH11, chloroplastic 
 ppo-u.5   7455185   ATP-dependent RNA helicase DEAH12, chloroplastic 
 ppo-u.5   7461259   ATP-dependent RNA helicase DEAH11, chloroplastic 
 mtr-u.5   25482846   ATP-dependent RNA helicase DEAH12, chloroplastic 
 mtr-u.5   11423024   ATP-dependent RNA helicase DEAH11, chloroplastic 
 mtr-u.5   11415010   ATP-dependent RNA helicase DEAH11, chloroplastic 
 sly-u.5   101260893   ATP-dependent RNA helicase DEAH11, chloroplastic-like 
 sly-u.5   101247309   ATP-dependent RNA helicase DEAH12, chloroplastic-like 
 osa-u.5   4343939   ATP-dependent RNA helicase DEAH11, chloroplastic 
 zma-u.5   103633431   putative RNA helicase family protein 

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Top 50 coexpressed genes to 121208253 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 121208253 (ghi-r.1 coexpression data)

CoexMap"121208253"


ghiLOC121208253 | Entrez gene ID : 121208253    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 2 2 1 2 3 2 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03040 [list] [network] Spliceosome (739 genes)
GO BP
GO CC
GO:0005622 [list] [network] intracellular anatomical structure  (21132 genes)  IEA  
GO MF
GO:0004386 [list] [network] helicase activity  (292 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (1753 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (3053 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (5155 genes)  IEA  
Protein XP_040934730.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_040934730.1)
Subcellular
localization
TargetP
chlo 6  (predict for XP_040934730.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
121208253
ath-u.5
for
AT4G01020
ath-u.5
for
AT5G10370
gma-u.5
for
HELRP
gma-u.5
for
100806464
vvi-u.5
for
100254070
ppo-u.5
for
7455185
ppo-u.5
for
7461259
mtr-u.5
for
25482846
mtr-u.5
for
11423024
mtr-u.5
for
11415010
sly-u.5
for
101260893
sly-u.5
for
101247309
osa-u.5
for
4343939
zma-u.5
for
103633431


Ortholog ID: 5136
Species ghi ghi ath ath bra bra bna bna cit gma gma vvi ppo ppo mtr mtr sly sly sot sot nta nta osa zma tae tae hvu hvu sbi bdi
Symbol LOC107950424 LOC107914369 AT4G01020 AT5G10370 LOC103846814 LOC103855862 LOC106384901 LOC106372475 LOC102610569 HELRP LOC100806464 LOC100254070 LOC7461259 LOC7455185 LOC11423024 LOC25482846 LOC101247309 LOC101260893 LOC102585171 LOC102589433 LOC107799341 LOC107796371 LOC4343939 LOC103633431 LOC123068937 LOC123052047 LOC123395777 LOC123425257 LOC8079212 LOC100837627
Function* ATP-dependent RNA helicase DEAH11, chloroplastic ATP-dependent RNA helicase DEAH11, chloroplastic helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein ATP-dependent RNA helicase DEAH12, chloroplastic ATP-dependent RNA helicase DEAH12, chloroplastic ATP-dependent RNA helicase DEAH12, chloroplastic-like ATP-dependent RNA helicase DEAH12, chloroplastic-like ATP-dependent RNA helicase DEAH11, chloroplastic-like ATP-dependent RNA helicase DEAH12, chloroplastic ATP-dependent RNA helicase DEAH12, chloroplastic ATP-dependent RNA helicase DEAH11, chloroplastic ATP-dependent RNA helicase DEAH11, chloroplastic ATP-dependent RNA helicase DEAH12, chloroplastic ATP-dependent RNA helicase DEAH11, chloroplastic ATP-dependent RNA helicase DEAH12, chloroplastic ATP-dependent RNA helicase DEAH12, chloroplastic-like ATP-dependent RNA helicase DEAH11, chloroplastic-like putative uncharacterized protein At4g01020, chloroplastic putative uncharacterized protein At4g01020, chloroplastic ATP-dependent RNA helicase DEAH11, chloroplastic-like ATP-dependent RNA helicase DEAH11, chloroplastic-like ATP-dependent RNA helicase DEAH11, chloroplastic putative RNA helicase family protein ATP-dependent RNA helicase DEAH11, chloroplastic ATP-dependent RNA helicase DEAH12, chloroplastic ATP-dependent RNA helicase DEAH12, chloroplastic-like ATP-dependent RNA helicase DEAH12, chloroplastic-like ATP-dependent RNA helicase DEAH11, chloroplastic ATP-dependent RNA helicase DEAH11, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 5
ghi04142 Lysosome 3
ghi04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 4
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 3
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 3
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 3
bna00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 3
cit00052 Galactose metabolism 2
cit00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr03082 ATP-dependent chromatin remodeling 2
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
sly04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 2
nta01232 Nucleotide metabolism 2
nta04820 Cytoskeleton in muscle cells 2
nta04136 Autophagy - other 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00760 Nicotinate and nicotinamide metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 4
tae03040 Spliceosome 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
sbi03013 Nucleocytoplasmic transport 2
sbi00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107950424 107914369 826439 830901 103846814 103855862 106384901 106372475 102610569 100810008 100806464 100254070 7461259 7455185 11423024 25482846 101247309 101260893 102585171 102589433 107799341 107796371 4343939 103633431 123068937 123052047 123395777 123425257 8079212 100837627
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