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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   121218228   39S ribosomal protein L41-A, mitochondrial 
 ghi-r.1   121230340   39S ribosomal protein L41-A, mitochondrial 
 ath-u.5   AT5G39800   Mitochondrial ribosomal protein L27 
 ath-u.5   AT5G40080   Mitochondrial ribosomal protein L27 
 bra-r.6   103858504   39S ribosomal protein L41-A, mitochondrial 
 bra-r.6   103838826   39S ribosomal protein L41-A, mitochondrial 
 bna-r.1   106399354   39S ribosomal protein L41-A, mitochondrial 
 bna-r.1   106435665   39S ribosomal protein L41-A, mitochondrial 
 bna-r.1   106443739   39S ribosomal protein L41-A, mitochondrial-like 
 cit-r.1   102610703   uncharacterized LOC102610703 
 gma-u.5   100790957   39S ribosomal protein L41-A, mitochondrial-like 
 gma-u.5   100306274   uncharacterized LOC100306274 
 vvi-u.5   100250642   39S ribosomal protein L41-A, mitochondrial-like 
 ppo-u.5   7474705   uncharacterized LOC7474705 
 mtr-u.5   11426659   39S ribosomal protein L41-A, mitochondrial 
 sly-u.5   101264817   uncharacterized LOC101264817 
 sot-r.1   102586898   39S ribosomal protein L41-A, mitochondrial 
 nta-r.1   107773084   uncharacterized LOC107773084 
 nta-r.1   107768882   uncharacterized LOC107768882 
 nta-r.1   107792763   uncharacterized LOC107792763 
 osa-u.5   4329997   uncharacterized LOC4329997 
 zma-u.5   100278608   Mitochondrial ribosomal protein L27 
 zma-u.5   100278182   Mitochondrial ribosomal protein L27 
 tae-r.2   123137483   39S ribosomal protein L41-A, mitochondrial 
 tae-r.2   123144841   39S ribosomal protein L41-A, mitochondrial 
 tae-r.2   123127762   39S ribosomal protein L41-A, mitochondrial 
 hvu-r.1   123406002   39S ribosomal protein L41-A, mitochondrial-like 
 sbi-r.1   8071485   uncharacterized LOC8071485 
 sbi-r.1   8080190   39S ribosomal protein L41-A, mitochondrial 
 bdi-r.1   100830849   39S ribosomal protein L41-A, mitochondrial 

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Top 50 coexpressed genes to 121218228 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 121218228 (ghi-r.1 coexpression data)

CoexMap"121218228"


ghiLOC121218228 | Entrez gene ID : 121218228    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 2 2 3 1 2 1 1 1 1 1 3 1 2 3 1 2 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03010 [list] [network] Ribosome (2429 genes)
GO BP
GO:0006412 [list] [network] translation  (1487 genes)  IEA  
GO CC
GO:0005762 [list] [network] mitochondrial large ribosomal subunit  (54 genes)  IEA  
GO MF
GO:0003735 [list] [network] structural constituent of ribosome  (1075 genes)  IEA  
Protein XP_040951027.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 3,  chlo_mito 3  (predict for XP_040951027.1)
Subcellular
localization
TargetP
mito 9  (predict for XP_040951027.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
121218228
ghi-r.1
for
121230340
ath-u.5
for
AT5G39800
ath-u.5
for
AT5G40080
bra-r.6
for
103858504
bra-r.6
for
103838826
bna-r.1
for
106399354
bna-r.1
for
106435665
bna-r.1
for
106443739
cit-r.1
for
102610703
gma-u.5
for
100790957
gma-u.5
for
100306274
vvi-u.5
for
100250642
ppo-u.5
for
7474705
mtr-u.5
for
11426659
sly-u.5
for
101264817
sot-r.1
for
102586898
nta-r.1
for
107773084
nta-r.1
for
107768882
nta-r.1
for
107792763
osa-u.5
for
4329997
zma-u.5
for
100278608
zma-u.5
for
100278182
tae-r.2
for
123137483
tae-r.2
for
123144841
tae-r.2
for
123127762
hvu-r.1
for
123406002
sbi-r.1
for
8071485
sbi-r.1
for
8080190
bdi-r.1
for
100830849


Ortholog ID: 6986
Species ghi ghi ath ath bra bra bna bna bna cit gma gma vvi ppo mtr sly sot nta nta nta osa zma zma tae tae tae hvu sbi sbi bdi
Symbol LOC121218228 LOC121230340 AT5G39800 AT5G40080 LOC103858504 LOC103838826 LOC106399354 LOC106435665 LOC111212569 LOC102610703 LOC100790957 LOC100306274 LOC100250642 LOC7474705 LOC11426659 LOC101264817 LOC102586898 LOC107773084 LOC107768882 LOC107792763 LOC4329997 LOC100278608 LOC100278182 LOC123137483 LOC123144841 LOC123127762 LOC123406002 LOC8071485 LOC8080190 LOC100830849
Function* 39S ribosomal protein L41-A, mitochondrial 39S ribosomal protein L41-A, mitochondrial Mitochondrial ribosomal protein L27 Mitochondrial ribosomal protein L27 39S ribosomal protein L41-A, mitochondrial 39S ribosomal protein L41-A, mitochondrial 39S ribosomal protein L41-A, mitochondrial 39S ribosomal protein L41-A, mitochondrial 39S ribosomal protein L41-A, mitochondrial uncharacterized LOC102610703 39S ribosomal protein L41-A, mitochondrial-like uncharacterized LOC100306274 39S ribosomal protein L41-A, mitochondrial-like uncharacterized LOC7474705 39S ribosomal protein L41-A, mitochondrial uncharacterized LOC101264817 39S ribosomal protein L41-A, mitochondrial uncharacterized LOC107773084 uncharacterized LOC107768882 uncharacterized LOC107792763 uncharacterized LOC4329997 Mitochondrial ribosomal protein L27 Mitochondrial ribosomal protein L27 39S ribosomal protein L41-A, mitochondrial 39S ribosomal protein L41-A, mitochondrial 39S ribosomal protein L41-A, mitochondrial 39S ribosomal protein L41-A, mitochondrial-like uncharacterized LOC8071485 39S ribosomal protein L41-A, mitochondrial 39S ribosomal protein L41-A, mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 4
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
ath01230 Biosynthesis of amino acids 3
ath00340 Histidine metabolism 2
ath00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 4
ath00340 Histidine metabolism 2
ath00350 Tyrosine metabolism 2
ath00360 Phenylalanine metabolism 2
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00190 Oxidative phosphorylation 6
cit00020 Citrate cycle (TCA cycle) 3
cit01200 Carbon metabolism 3
cit01240 Biosynthesis of cofactors 3
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 7
gma03008 Ribosome biogenesis in eukaryotes 4
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 6
gma03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00190 Oxidative phosphorylation 3
vvi03040 Spliceosome 2
vvi03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 16
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
sot03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta03018 RNA degradation 2
nta00600 Sphingolipid metabolism 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03010 Ribosome 3
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 11
nta04120 Ubiquitin mediated proteolysis 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00630 Glyoxylate and dicarboxylate metabolism 3
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 11
tae03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 11
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 11
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 15
sbi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 6
bdi03008 Ribosome biogenesis in eukaryotes 4
bdi03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 121218228 121230340 833976 834005 103858504 103838826 106399354 106435665 111212569 102610703 100790957 100306274 100250642 7474705 11426659 101264817 102586898 107773084 107768882 107792763 4329997 100278608 100278182 123137483 123144841 123127762 123406002 8071485 8080190 100830849
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