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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   121219335   pentatricopeptide repeat-containing protein At5g50280, chloroplastic 
 ghi-r.1   107953564   pentatricopeptide repeat-containing protein At5g50280, chloroplastic 
 ath-u.5   EMB1006   Pentatricopeptide repeat (PPR) superfamily protein 
 bra-r.6   103858442   pentatricopeptide repeat-containing protein At5g50280, chloroplastic 
 bna-r.1   106388479   pentatricopeptide repeat-containing protein At5g50280, chloroplastic 
 bna-r.1   106388418   pentatricopeptide repeat-containing protein At5g50280, chloroplastic-like 
 cit-r.1   102613269   pentatricopeptide repeat-containing protein At5g50280, chloroplastic 
 gma-u.5   100810527   pentatricopeptide repeat-containing protein At5g50280, chloroplastic 
 gma-u.5   100788628   pentatricopeptide repeat-containing protein At5g50280, chloroplastic 
 gma-u.5   100775643   pentatricopeptide repeat-containing protein At5g50280, chloroplastic 
 vvi-u.5   100241526   pentatricopeptide repeat-containing protein At5g50280, chloroplastic-like 
 ppo-u.5   7484442   pentatricopeptide repeat-containing protein At5g50280, chloroplastic 
 mtr-u.5   11432071   pentatricopeptide repeat-containing protein At5g50280, chloroplastic 
 sly-u.5   101255679   pentatricopeptide repeat-containing protein At5g50280, chloroplastic 
 sot-r.1   102603626   pentatricopeptide repeat-containing protein At5g50280, chloroplastic 
 nta-r.1   107820321   uncharacterized LOC107820321 
 nta-r.1   107830880   uncharacterized LOC107830880 
 osa-u.5   4338318   pentatricopeptide repeat-containing protein At5g50280, chloroplastic 
 zma-u.5   103651237   pentatricopeptide repeat-containing protein At5g50280, chloroplastic 
 tae-r.2   123045257   pentatricopeptide repeat-containing protein At5g50280, chloroplastic 
 tae-r.2   123188998   pentatricopeptide repeat-containing protein At5g50280, chloroplastic 
 tae-r.2   123053090   pentatricopeptide repeat-containing protein At5g50280, chloroplastic 
 hvu-r.1   123426476   pentatricopeptide repeat-containing protein At5g50280, chloroplastic 
 sbi-r.1   8055577   pentatricopeptide repeat-containing protein At5g50280, chloroplastic 
 bdi-r.1   100824950   pentatricopeptide repeat-containing protein At5g50280, chloroplastic 

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Top 50 coexpressed genes to 121219335 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 121219335 (ghi-r.1 coexpression data)

CoexMap"121219335"


ghiLOC121219335 | Entrez gene ID : 121219335    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 2 1 3 1 1 1 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_040953216.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  chlo 3,  plas 1,  mito_plas 1  (predict for XP_040953216.1)
Subcellular
localization
TargetP
chlo 7  (predict for XP_040953216.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
121219335
ghi-r.1
for
107953564
ath-u.5
for
EMB1006
bra-r.6
for
103858442
bna-r.1
for
106388479
bna-r.1
for
106388418
cit-r.1
for
102613269
gma-u.5
for
100810527
gma-u.5
for
100788628
gma-u.5
for
100775643
vvi-u.5
for
100241526
ppo-u.5
for
7484442
mtr-u.5
for
11432071
sly-u.5
for
101255679
sot-r.1
for
102603626
nta-r.1
for
107820321
nta-r.1
for
107830880
osa-u.5
for
4338318
zma-u.5
for
103651237
tae-r.2
for
123045257
tae-r.2
for
123188998
tae-r.2
for
123053090
hvu-r.1
for
123426476
sbi-r.1
for
8055577
bdi-r.1
for
100824950


Ortholog ID: 10376
Species ghi ghi ath bra bna bna cit gma gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC121219335 LOC107953564 EMB1006 LOC103858442 LOC106388479 LOC106388418 LOC102613269 LOC100810527 LOC100788628 LOC100775643 LOC100241526 LOC7484442 LOC11432071 LOC101255679 LOC102603626 LOC107820321 LOC107830880 LOC4338318 LOC103651237 LOC123045257 LOC123188998 LOC123053090 LOC123426476 LOC8055577 LOC100824950
Function* pentatricopeptide repeat-containing protein At5g50280, chloroplastic pentatricopeptide repeat-containing protein At5g50280, chloroplastic Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At5g50280, chloroplastic pentatricopeptide repeat-containing protein At5g50280, chloroplastic pentatricopeptide repeat-containing protein At5g50280, chloroplastic-like pentatricopeptide repeat-containing protein At5g50280, chloroplastic pentatricopeptide repeat-containing protein At5g50280, chloroplastic pentatricopeptide repeat-containing protein At5g50280, chloroplastic pentatricopeptide repeat-containing protein At5g50280, chloroplastic pentatricopeptide repeat-containing protein At5g50280, chloroplastic-like pentatricopeptide repeat-containing protein At5g50280, chloroplastic pentatricopeptide repeat-containing protein At5g50280, chloroplastic pentatricopeptide repeat-containing protein At5g50280, chloroplastic pentatricopeptide repeat-containing protein At5g50280, chloroplastic uncharacterized LOC107820321 uncharacterized LOC107830880 pentatricopeptide repeat-containing protein At5g50280, chloroplastic pentatricopeptide repeat-containing protein At5g50280, chloroplastic pentatricopeptide repeat-containing protein At5g50280, chloroplastic pentatricopeptide repeat-containing protein At5g50280, chloroplastic pentatricopeptide repeat-containing protein At5g50280, chloroplastic pentatricopeptide repeat-containing protein At5g50280, chloroplastic pentatricopeptide repeat-containing protein At5g50280, chloroplastic pentatricopeptide repeat-containing protein At5g50280, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 4
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 3
bna03410 Base excision repair 3
bna03420 Nucleotide excision repair 3
bna03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 3
bna03410 Base excision repair 3
bna03420 Nucleotide excision repair 3
bna03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 2
gma03410 Base excision repair 2
gma03420 Nucleotide excision repair 2
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 6
tae01240 Biosynthesis of cofactors 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 6
tae01240 Biosynthesis of cofactors 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 3
bdi00500 Starch and sucrose metabolism 3
bdi00630 Glyoxylate and dicarboxylate metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 121219335 107953564 835093 103858442 106388479 106388418 102613269 100810527 100788628 100775643 100241526 7484442 11432071 101255679 102603626 107820321 107830880 4338318 103651237 123045257 123188998 123053090 123426476 8055577 100824950
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