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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   121219564   transcription factor PIF1 
 ghi-r.1   107894214   transcription factor PIF1 
 ghi-r.1   107924656   transcription factor PIF1 
 ghi-r.1   107925868   transcription factor PIF1 
 ath-u.5   PIL5   phytochrome interacting factor 3-like 5 
 bra-r.6   117126501   transcription factor PIF1 
 bna-r.1   106357954   transcription factor PIF1 
 cit-r.1   102621687   transcription factor PIF1 
 gma-u.5   100797225   transcription factor PIF1 
 gma-u.5   100792121   transcription factor PIF1 
 vvi-u.5   100264869   transcription factor PIF1 
 ppo-u.5   7459525   transcription factor PIF1 
 mtr-u.5   25484155   transcription factor PIF1 
 mtr-u.5   11419484   transcription factor PIF1 
 sly-u.5   101260141   transcription factor PIF1 
 sly-u.5   101264668   transcription factor PIF1 
 sot-r.1   102585610   transcription factor PIF1-like 
 sot-r.1   102583507   transcription factor PIF1-like 
 nta-r.1   107828013   transcription factor PIF1 
 nta-r.1   107808530   transcription factor PIF1-like 
 nta-r.1   107773950   transcription factor PIF1-like 

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Top 50 coexpressed genes to 121219564 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 121219564 (ghi-r.1 coexpression data)

CoexMap"121219564"


ghiLOC121219564 | Entrez gene ID : 121219564    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta bdi osa tae zma cre sbi hvu
Paralog 4 1 1 1 1 2 1 1 2 2 2 3 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi04075 [list] [network] Plant hormone signal transduction (1215 genes)
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (4318 genes)  IEA  
GO CC
GO MF
GO:0046983 [list] [network] protein dimerization activity  (1206 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (3140 genes)  IEA  
Protein XP_040953837.1 [sequence] [blastp]
XP_040953838.1 [sequence] [blastp]
XP_040953839.1 [sequence] [blastp]
XP_040953840.1 [sequence] [blastp]
XP_040953841.1 [sequence] [blastp]
XP_040953842.1 [sequence] [blastp]
XP_040953843.1 [sequence] [blastp]
XP_040953844.1 [sequence] [blastp]
XP_040953845.1 [sequence] [blastp]
XP_040953846.1 [sequence] [blastp]
XP_040953847.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_040953837.1)
nucl 10  (predict for XP_040953838.1)
nucl 10  (predict for XP_040953839.1)
nucl 10  (predict for XP_040953840.1)
nucl 10  (predict for XP_040953841.1)
nucl 10  (predict for XP_040953842.1)
nucl 10  (predict for XP_040953843.1)
nucl 10  (predict for XP_040953844.1)
nucl 10  (predict for XP_040953845.1)
nucl 10  (predict for XP_040953846.1)
nucl 10  (predict for XP_040953847.1)
Subcellular
localization
TargetP
other 9  (predict for XP_040953837.1)
other 9  (predict for XP_040953838.1)
other 9  (predict for XP_040953839.1)
other 9  (predict for XP_040953840.1)
other 9  (predict for XP_040953841.1)
other 9  (predict for XP_040953842.1)
other 9  (predict for XP_040953843.1)
other 9  (predict for XP_040953844.1)
other 9  (predict for XP_040953845.1)
other 9  (predict for XP_040953846.1)
other 9  (predict for XP_040953847.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
121219564
ghi-r.1
for
107894214
ghi-r.1
for
107924656
ghi-r.1
for
107925868
ath-u.5
for
PIL5
bra-r.6
for
117126501
bna-r.1
for
106357954
cit-r.1
for
102621687
gma-u.5
for
100797225
gma-u.5
for
100792121
vvi-u.5
for
100264869
ppo-u.5
for
7459525
mtr-u.5
for
25484155
mtr-u.5
for
11419484
sly-u.5
for
101260141
sly-u.5
for
101264668
sot-r.1
for
102585610
sot-r.1
for
102583507
nta-r.1
for
107828013
nta-r.1
for
107808530
nta-r.1
for
107773950


Ortholog ID: 8878
Species ghi ghi ghi ath bra bna cit gma gma gma vvi ppo mtr mtr sly sly sot sot nta nta nta
Symbol LOC107924656 LOC107925868 LOC107924576 PIL5 LOC117126501 LOC106357954 LOC102621687 LOC100797225 LOC100792121 LOC100788491 LOC100264869 LOC7459525 LOC25484155 LOC11419484 LOC101260141 LOC101264668 LOC102585610 LOC102583507 LOC107828013 LOC107808530 LOC142171506
Function* transcription factor PIF1 transcription factor PIF1 transcription factor PIF1 phytochrome interacting factor 3-like 5 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1-like transcription factor PIF1-like transcription factor PIF1 transcription factor PIF1-like transcription factor PIF1-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 6
ghi00905 Brassinosteroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 3
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 5
gma00500 Starch and sucrose metabolism 3
gma00860 Porphyrin metabolism 2
gma01240 Biosynthesis of cofactors 2
gma00541 Biosynthesis of various nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 4
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 3
sly00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 9
sot04075 Plant hormone signal transduction 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 5
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107924656 107925868 107924576 816538 117126501 106357954 102621687 100797225 100792121 100788491 100264869 7459525 25484155 11419484 101260141 101264668 102585610 102583507 107828013 107808530 142171506
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