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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   121223048   metal transporter Nramp3 
 ghi-r.1   107945351   metal transporter Nramp3 
 ghi-r.1   107958165   metal transporter Nramp2 
 ghi-r.1   107932570   metal transporter Nramp3 
 ath-u.5   NRAMP3   natural resistance-associated macrophage protein 3 
 ath-u.5   NRAMP4   natural resistance associated macrophage protein 4 
 ath-u.5   NRAMP2   NRAMP metal ion transporter 2 
 bra-r.6   103849582   metal transporter Nramp2 
 bra-r.6   103842427   metal transporter Nramp3 
 bra-r.6   103858392   metal transporter Nramp3 
 bna-r.1   106402143   metal transporter Nramp2 
 bna-r.1   125575273   metal transporter Nramp4-like 
 bna-r.1   106377183   metal transporter Nramp3-like 
 cit-r.1   102613637   metal transporter Nramp2-like 
 cit-r.1   102621721   metal transporter Nramp3 
 gma-u.5   NRAMP2A   metal transporter Nramp2a 
 gma-u.5   NRAMP3A   metal transporter Nramp3a 
 gma-u.5   NRAMP3B   metal transporter Nramp3b 
 vvi-u.5   100268041   metal transporter Nramp3.2 
 vvi-u.5   100262579   metal transporter Nramp2 
 ppo-u.5   7472676   metal transporter Nramp2 
 ppo-u.5   18101156   metal transporter Nramp3 
 ppo-u.5   18101157   metal transporter Nramp3 
 mtr-u.5   11407831   metal transporter Nramp3 
 mtr-u.5   25493521   metal transporter Nramp3 
 sly-u.5   NRAMP3   metal transporter 
 sly-u.5   Nramp2   metal transporter Nramp2 
 sot-r.1   102602058   metal transporter Nramp2-like 
 sot-r.1   102599421   metal transporter Nramp3 
 sot-r.1   102578842   metal transporter Nramp2-like 
 nta-r.1   107779295   metal transporter Nramp3-like 
 nta-r.1   107807465   metal transporter Nramp3.2-like 
 nta-r.1   107798562   metal transporter Nramp3.2 
 osa-u.5   4332012   metal transporter Nramp2-like 
 osa-u.5   4352640   metal transporter Nramp6-like 
 osa-u.5   4333420   metal transporter Nramp6-like 
 zma-u.5   100383075   uncharacterized LOC100383075 
 zma-u.5   100283910   uncharacterized LOC100283910 
 tae-r.2   123085022   metal transporter Nramp2 
 tae-r.2   123093043   metal transporter Nramp2 
 hvu-r.1   123397542   metal transporter Nramp6-like 
 hvu-r.1   123449372   metal transporter Nramp2 
 sbi-r.1   8069691   metal transporter Nramp6 
 sbi-r.1   8054221   metal transporter Nramp2 
 bdi-r.1   100845842   metal transporter Nramp2 
 bdi-r.1   100828548   metal transporter Nramp6 
 cre-r.1   CHLRE_05g248300v5   uncharacterized protein 

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Top 50 coexpressed genes to 121223048 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 121223048 (ghi-r.1 coexpression data)

CoexMap"121223048"


ghiLOC121223048 | Entrez gene ID : 121223048    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 3 3 2 3 2 3 2 2 3 3 3 2 2 2 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi04142 [list] [network] Lysosome (184 genes)
GO BP
GO:2000379 [list] [network] positive regulation of reactive oxygen species metabolic process  (5 genes)  IEA  
GO:0042742 [list] [network] defense response to bacterium  (72 genes)  IEA  
GO:0030001 [list] [network] metal ion transport  (442 genes)  IEA  
GO CC
GO:0005774 [list] [network] vacuolar membrane  (246 genes)  IEA  
GO MF
GO:0015086 [list] [network] cadmium ion transmembrane transporter activity  (24 genes)  IEA  
GO:0005384 [list] [network] manganese ion transmembrane transporter activity  (57 genes)  IEA  
Protein XP_040959908.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 8,  cyto 1,  vacu 1,  golg 1  (predict for XP_040959908.1)
Subcellular
localization
TargetP
other 8  (predict for XP_040959908.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
121223048
ghi-r.1
for
107945351
ghi-r.1
for
107958165
ghi-r.1
for
107932570
ath-u.5
for
NRAMP3
ath-u.5
for
NRAMP4
ath-u.5
for
NRAMP2
bra-r.6
for
103849582
bra-r.6
for
103842427
bra-r.6
for
103858392
bna-r.1
for
106402143
bna-r.1
for
125575273
bna-r.1
for
106377183
cit-r.1
for
102613637
cit-r.1
for
102621721
gma-u.5
for
NRAMP2A
gma-u.5
for
NRAMP3A
gma-u.5
for
NRAMP3B
vvi-u.5
for
100268041
vvi-u.5
for
100262579
ppo-u.5
for
7472676
ppo-u.5
for
18101156
ppo-u.5
for
18101157
mtr-u.5
for
11407831
mtr-u.5
for
25493521
sly-u.5
for
NRAMP3
sly-u.5
for
Nramp2
sot-r.1
for
102602058
sot-r.1
for
102599421
sot-r.1
for
102578842
nta-r.1
for
107779295
nta-r.1
for
107807465
nta-r.1
for
107798562
osa-u.5
for
4332012
osa-u.5
for
4352640
osa-u.5
for
4333420
zma-u.5
for
100383075
zma-u.5
for
100283910
tae-r.2
for
123085022
tae-r.2
for
123093043
hvu-r.1
for
123397542
hvu-r.1
for
123449372
sbi-r.1
for
8069691
sbi-r.1
for
8054221
bdi-r.1
for
100845842
bdi-r.1
for
100828548
cre-r.1
for
CHLRE_05g248300v5


Ortholog ID: 1485
Species ghi ghi ghi ath ath ath bra bra bra bna bna bna cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr sly sly sot sot sot nta nta nta osa osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi cre
Symbol LOC107931677 LOC107905619 LOC107900264 NRAMP3 NRAMP4 NRAMP2 LOC103849582 LOC103842427 LOC103829512 LOC125584396 LOC106358301 LOC106371864 LOC102613637 LOC102621721 NRAMP2A NRAMP3A NRAMP1B LOC100268041 LOC100262579 LOC7472676 LOC18101156 LOC18101157 LOC25493521 LOC25489927 NRAMP3 Nramp2 LOC102602058 LOC102599421 LOC102578842 LOC107779295 LOC107798562 LOC107798557 LOC4332012 LOC4352640 LOC4333420 LOC100383075 LOC100283910 LOC123093043 LOC123119624 LOC123397542 LOC123449372 LOC8069691 LOC8054221 LOC100845842 LOC100828548 CHLRE_05g248300v5
Function* metal transporter Nramp3 metal transporter Nramp2 metal transporter Nramp3 natural resistance-associated macrophage protein 3 natural resistance associated macrophage protein 4 NRAMP metal ion transporter 2 metal transporter Nramp2 metal transporter Nramp3 metal transporter Nramp4 metal transporter Nramp3-like metal transporter Nramp4 metal transporter Nramp2 metal transporter Nramp2-like metal transporter Nramp3 metal transporter Nramp2a metal transporter Nramp3a metal transporter Nramp1b metal transporter Nramp3.2 metal transporter Nramp2 metal transporter Nramp2 metal transporter Nramp3 metal transporter Nramp3 metal transporter Nramp3 metal transporter Nramp2 metal transporter metal transporter Nramp2 metal transporter Nramp2-like metal transporter Nramp3 metal transporter Nramp2-like metal transporter Nramp3-like metal transporter Nramp3.2 metal transporter Nramp2-like metal transporter Nramp2-like metal transporter Nramp6-like metal transporter Nramp6-like uncharacterized LOC100383075 uncharacterized LOC100283910 metal transporter Nramp2 metal transporter Nramp6 metal transporter Nramp6-like metal transporter Nramp2 metal transporter Nramp6 metal transporter Nramp2 metal transporter Nramp2 metal transporter Nramp6 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04142 Lysosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00230 Purine metabolism 2
ghi04075 Plant hormone signal transduction 2
ghi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04142 Lysosome 5
ghi00904 Diterpenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00071 Fatty acid degradation 5
ath01212 Fatty acid metabolism 4
ath00280 Valine, leucine and isoleucine degradation 3
ath00592 alpha-Linolenic acid metabolism 3
ath01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00520 Amino sugar and nucleotide sugar metabolism 4
ath04142 Lysosome 2
ath01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 6
bra04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04142 Lysosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04142 Lysosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00051 Fructose and mannose metabolism 2
cit00500 Starch and sucrose metabolism 2
cit00520 Amino sugar and nucleotide sugar metabolism 2
cit01250 Biosynthesis of nucleotide sugars 2
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00230 Purine metabolism 2
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04142 Lysosome 2
gma00860 Porphyrin metabolism 2
gma04120 Ubiquitin mediated proteolysis 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04142 Lysosome 2
vvi00730 Thiamine metabolism 2
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00270 Cysteine and methionine metabolism 3
vvi00710 Carbon fixation by Calvin cycle 3
vvi01200 Carbon metabolism 3
vvi00513 Various types of N-glycan biosynthesis 3
vvi04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
ppo04144 Endocytosis 3
ppo04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00740 Riboflavin metabolism 4
mtr01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr02010 ABC transporters 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04142 Lysosome 3
sot04144 Endocytosis 3
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00480 Glutathione metabolism 2
nta00561 Glycerolipid metabolism 2
nta04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04142 Lysosome 4
nta04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04142 Lysosome 2
nta00053 Ascorbate and aldarate metabolism 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta01240 Biosynthesis of cofactors 2
nta01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 4
osa00760 Nicotinate and nicotinamide metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04136 Autophagy - other 2
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00230 Purine metabolism 2
zma00240 Pyrimidine metabolism 2
zma01232 Nucleotide metabolism 2
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00270 Cysteine and methionine metabolism 3
tae00380 Tryptophan metabolism 3
tae00100 Steroid biosynthesis 3
tae00561 Glycerolipid metabolism 3
tae00564 Glycerophospholipid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 3
hvu04142 Lysosome 2
hvu04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03060 Protein export 2
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04081 Hormone signaling 2
cre00860 Porphyrin metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107931677 107905619 107900264 816847 836868 841127 103849582 103842427 103829512 125584396 106358301 106371864 102613637 102621721 100812381 100791117 100789871 100268041 100262579 7472676 18101156 18101157 25493521 25489927 544257 543927 102602058 102599421 102578842 107779295 107798562 107798557 4332012 4352640 4333420 100383075 100283910 123093043 123119624 123397542 123449372 8069691 8054221 100845842 100828548 66053512
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