ATTED-II : GeneCoexpression result

Species	Gene	Description
ghi-r.1	121223084	uncharacterized LOC121223084
ghi-r.1	107898526	uncharacterized LOC107898526
ath-u.5	AT4G39880	Ribosomal protein L23/L15e family protein
bra-r.6	103862612	50S ribosomal protein L23
bra-r.6	103853478	50S ribosomal protein L23
bna-r.1	106441272	50S ribosomal protein L23
bna-r.1	106439288	50S ribosomal protein L23
bna-r.1	106409075	50S ribosomal protein L23
cit-r.1	102620099	uncharacterized LOC102620099
gma-u.5	100800404	uncharacterized LOC100800404
gma-u.5	100799927	50S ribosomal protein L23
vvi-u.5	100245960	uncharacterized LOC100245960
ppo-u.5	7476080	uncharacterized LOC7476080
mtr-u.5	11415029	uncharacterized LOC11415029
sly-u.5	101256642	uncharacterized LOC101256642
sot-r.1	102577655	ribosomal protein L23 family protein
nta-r.1	107762107	uncharacterized LOC107762107
nta-r.1	107824930	uncharacterized LOC107824930
nta-r.1	107798942	uncharacterized LOC107798942
osa-u.5	4343020	uncharacterized LOC4343020
zma-u.5	100282534	uncharacterized LOC100282534
tae-r.2	123152532	uncharacterized LOC123152532
tae-r.2	123159193	uncharacterized LOC123159193
tae-r.2	123165779	uncharacterized LOC123165779
hvu-r.1	123407722	uncharacterized LOC123407722
sbi-r.1	8079529	uncharacterized LOC8079529
bdi-r.1	100826794	uncharacterized LOC100826794
cre-r.1	CHLRE_17g727350v5	uncharacterized protein

Annotation

functional annotation

KEGG

ghi03010 [list] [network] Ribosome (2429 genes)

GO BP

GO:0032543 [list] [network] mitochondrial translation

(58 genes)

IEA

GO CC

GO:0005762 [list] [network] mitochondrial large ribosomal subunit	(54 genes)	IEA
GO:0005840 [list] [network] ribosome	(1110 genes)	IEA

GO MF

GO:0003735 [list] [network] structural constituent of ribosome

(1075 genes)

IEA

Protein

XP_040960005.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, nucl 2, mito 2, cyto 1, E.R. 1, cyto_E.R. 1

(predict for XP_040960005.1)

Subcellular
localization
TargetP

mito 8

(predict for XP_040960005.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 121223084	ghi-r.1 for 107898526	ath-u.5 for AT4G39880	bra-r.6 for 103862612	bra-r.6 for 103853478	bna-r.1 for 106441272	bna-r.1 for 106439288	bna-r.1 for 106409075	cit-r.1 for 102620099	gma-u.5 for 100800404	gma-u.5 for 100799927	vvi-u.5 for 100245960	ppo-u.5 for 7476080	mtr-u.5 for 11415029	sly-u.5 for 101256642	sot-r.1 for 102577655	nta-r.1 for 107762107	nta-r.1 for 107824930	nta-r.1 for 107798942	osa-u.5 for 4343020	zma-u.5 for 100282534	tae-r.2 for 123152532	tae-r.2 for 123159193	tae-r.2 for 123165779	hvu-r.1 for 123407722	sbi-r.1 for 8079529	bdi-r.1 for 100826794	cre-r.1 for CHLRE_17g727350v5

Ortholog

Ortholog ID: 6638

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC121223084

uncharacterized LOC107898526

Ribosomal protein L23/L15e family protein

50S ribosomal protein L23

50S ribosomal protein L23-like

uncharacterized LOC102620099

uncharacterized LOC100800404

50S ribosomal protein L23

uncharacterized LOC100245960

uncharacterized LOC7476080

uncharacterized LOC11415029

uncharacterized LOC101256642

ribosomal protein L23 family protein

uncharacterized LOC107824930

uncharacterized LOC107798942

uncharacterized LOC107792816

uncharacterized LOC4343020

uncharacterized LOC100282534

uncharacterized LOC123152532

uncharacterized LOC123159193

uncharacterized LOC123165779

uncharacterized LOC123407722

uncharacterized LOC8079529

uncharacterized LOC100826794

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	4
bra04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	7
bna03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	7
bna03013	Nucleocytoplasmic transport	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	8
bna03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	16
gma04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	9
mtr03420	Nucleotide excision repair	3
mtr03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	3
sly03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	10
sot00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	5
osa00240	Pyrimidine metabolism	2
osa01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	2
zma03040	Spliceosome	2
zma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	14
tae03040	Spliceosome	2
tae04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	18
tae04120	Ubiquitin mediated proteolysis	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	16
tae04120	Ubiquitin mediated proteolysis	4
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	11
bdi03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03010	Ribosome	8

Expression

Expression pattern

Entrez Gene ID^*

121223084

107898526

830147

103862612

103853478

106441272

125601595

106353435

102620099

100800404

100799927

100245960

7476080

11415029

101256642

102577655

107824930

107798942

107792816

4343020

100282534

123152532

123159193

123165779

123407722

8079529

100826794

5722806

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 121223084 (ghi-r.1 coexpression data)

Top 50 enrichment test to 121223084 (ghi-r.1 coexpression data)


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	2	1	2	3	1	2	1	1	1	1	1	3	1	1	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 121223084 (ghi-r.1 coexpression data)

Top 50 enrichment test to 121223084 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**