ATTED-II : GeneCoexpression result

Species	Gene	Description
ghi-r.1	121223712	uncharacterized LOC121223712
ath-u.5	AT4G00980	zinc knuckle (CCHC-type) family protein
gma-u.5	100800963	uncharacterized LOC100800963
gma-u.5	100818901	uncharacterized LOC100818901
ppo-u.5	7497256	retrovirus-related Pol polyprotein from transposon TNT 1-94
mtr-u.5	112416335	uncharacterized LOC112416335

functional annotation

KEGG

GO BP

GO:0060261 [list] [network] positive regulation of transcription initiation by RNA polymerase II

(15 genes)

IEA

GO CC

GO:0005667 [list] [network] transcription regulator complex	(349 genes)	IEA
GO:0005634 [list] [network] nucleus	(7681 genes)	IEA

GO MF

GO:0003713 [list] [network] transcription coactivator activity	(85 genes)	IEA
GO:0008270 [list] [network] zinc ion binding	(1753 genes)	IEA
GO:0003677 [list] [network] DNA binding	(4831 genes)	IEA

Protein

XP_040961876.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, cyto 3, cysk 1, cyto_E.R. 1, cyto_plas 1

(predict for XP_040961876.1)

Subcellular
localization
TargetP

other 9

(predict for XP_040961876.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 121223712	ath-u.5 for AT4G00980	gma-u.5 for 100800963	gma-u.5 for 100818901	ppo-u.5 for 7497256	mtr-u.5 for 112416335

Ortholog ID: 13733

Species

ghi

ath

bra

bna

cit

gma

ppo

mtr

nta

Symbol

Function^*

copia protein

uncharacterized LOC121223712

zinc knuckle (CCHC-type) family protein

uncharacterized LOC103836859

uncharacterized BNAA09G00310D

uncharacterized LOC125593232

uncharacterized LOC127901274

hypothetical protein

uncharacterized LOC100800963

uncharacterized LOC100818901

retrovirus-related Pol polyprotein from transposon TNT 1-94

uncharacterized LOC112416335

uncharacterized LOC107784729

uncharacterized LOC107760831

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	2
ghi03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	4
ghi03083	Polycomb repressive complex	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	2
mtr03082	ATP-dependent chromatin remodeling	2
mtr03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03440	Homologous recombination	2
nta03450	Non-homologous end-joining	2
nta00730	Thiamine metabolism	2
nta00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	2
nta03440	Homologous recombination	2
nta03450	Non-homologous end-joining	2

Expression

Expression pattern

Entrez Gene ID^*

107922697

121223712

827935

103836859

106365731

125593232

127901274

102626154

100800963

100818901

7497256

112416335

107784729

107760831


Species	ghi	ath	gma	ppo	mtr	hvu	zma	vvi	bna	sly	bra	cit	osa	sbi	bdi	nta	tae	cre	sot
Paralog	1	1	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 121223712 (ghi-r.1 coexpression data)

Top 50 enrichment test to 121223712 (ghi-r.1 coexpression data)

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 121223712 (ghi-r.1 coexpression data)

Top 50 enrichment test to 121223712 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**