ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
tae-r.2	123047409	HBS1-like protein
tae-r.2	123046604	elongation factor 1-alpha
tae-r.2	123190335	HBS1-like protein
tae-r.2	123055211	HBS1-like protein
hvu-r.1	123428344	HBS1-like protein
hvu-r.1	123427772	HBS1-like protein
bdi-r.1	100826934	HBS1-like protein
bdi-r.1	100840685	HBS1-like protein
osa-u.5	4337409	uncharacterized LOC4337409
osa-u.5	4326095	uncharacterized LOC4326095
osa-u.5	4336848	uncharacterized LOC4336848
zma-u.5	103642014	HBS1-like protein
zma-u.5	103645758	HBS1-like protein
sbi-r.1	8071103	HBS1-like protein
sbi-r.1	8085873	HBS1-like protein
ath-u.5	AT5G10630	Translation elongation factor EF1A/initiation factor IF2gamma family protein
gma-u.5	100798594	HBS1-like protein
gma-u.5	100801724	elongation factor 1-alpha
sly-u.5	101256564	uncharacterized LOC101256564
sly-u.5	101264306	uncharacterized LOC101264306
bra-r.6	103855879	HBS1-like protein
bra-r.6	103850312	elongation factor 1-alpha 1
vvi-u.5	100262342	uncharacterized LOC100262342
ppo-u.5	7458736	uncharacterized LOC7458736
ppo-u.5	18100762	uncharacterized LOC18100762
mtr-u.5	11406169	elongation factor 1-alpha
ghi-r.1	107937919	HBS1-like protein
ghi-r.1	107902013	HBS1-like protein
ghi-r.1	107961757	HBS1-like protein
bna-r.1	106430228	HBS1-like protein
bna-r.1	111202786	HBS1-like protein
bna-r.1	106384889	HBS1-like protein
sot-r.1	102603749	HBS1-like protein
sot-r.1	102586109	HBS1-like protein
cit-r.1	102609501	uncharacterized LOC102609501
nta-r.1	107830579	uncharacterized LOC107830579
nta-r.1	107810086	uncharacterized LOC107810086
nta-r.1	107784138	uncharacterized LOC107784138
cre-r.1	CHLRE_13g565750v5	uncharacterized protein

Top 50 coexpressed genes to 123047409 (tae-r.2 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 123047409 (tae-r.2 coexpression data)

CoexMap"123047409"

[Cytoscape]

Annotation

functional annotation

KEGG

taes03015 [list] [network] mRNA surveillance pathway (388 genes)

GO BP

GO CC

GO MF

GO:0003924 [list] [network] GTPase activity	(553 genes)	IEA
GO:0005525 [list] [network] GTP binding	(638 genes)	IEA

Protein

XP_044326886.1 [sequence] [blastp]
XP_044326887.1 [sequence] [blastp]
XP_044326888.1 [sequence] [blastp]
XP_044326889.1 [sequence] [blastp]
XP_044326891.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 2, chlo 1, plas 1	(predict for XP_044326886.1)
nucl 6, cyto 2, chlo 1, plas 1	(predict for XP_044326887.1)
nucl 6, cyto 2, chlo 1, plas 1	(predict for XP_044326888.1)
chlo 3, nucl 3, cyto 2, mito 1, pero 1, E.R._vacu 1	(predict for XP_044326889.1)
chlo 3, nucl 3, cyto 2, mito 1, pero 1, E.R._vacu 1	(predict for XP_044326891.1)

Subcellular
localization
TargetP

other 7	(predict for XP_044326886.1)
other 7	(predict for XP_044326887.1)
other 7	(predict for XP_044326888.1)
other 7	(predict for XP_044326889.1)
other 8	(predict for XP_044326891.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 123047409	tae-r.2 for 123046604	tae-r.2 for 123190335	tae-r.2 for 123055211	hvu-r.1 for 123428344	hvu-r.1 for 123427772	bdi-r.1 for 100826934	bdi-r.1 for 100840685	osa-u.5 for 4337409	osa-u.5 for 4326095	osa-u.5 for 4336848	zma-u.5 for 103642014	zma-u.5 for 103645758	sbi-r.1 for 8071103	sbi-r.1 for 8085873	ath-u.5 for AT5G10630	gma-u.5 for 100798594	gma-u.5 for 100801724	sly-u.5 for 101256564	sly-u.5 for 101264306	bra-r.6 for 103855879	bra-r.6 for 103850312	vvi-u.5 for 100262342	ppo-u.5 for 7458736	ppo-u.5 for 18100762	mtr-u.5 for 11406169	ghi-r.1 for 107937919	ghi-r.1 for 107902013	ghi-r.1 for 107961757	bna-r.1 for 106430228	bna-r.1 for 111202786	bna-r.1 for 106384889	sot-r.1 for 102603749	sot-r.1 for 102586109	cit-r.1 for 102609501	nta-r.1 for 107830579	nta-r.1 for 107810086	nta-r.1 for 107784138	cre-r.1 for CHLRE_13g565750v5

Ortholog

Ortholog ID: 4286

Species

tae

hvu

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

HBS1-like protein

uncharacterized LOC4337409

uncharacterized LOC4326095

uncharacterized LOC4336848

HBS1-like protein

Translation elongation factor EF1A/initiation factor IF2gamma family protein

HBS1-like protein

elongation factor 1-alpha

uncharacterized LOC101256564

uncharacterized LOC101264306

HBS1-like protein

elongation factor 1-alpha 1

uncharacterized LOC100262342

uncharacterized LOC7458736

uncharacterized LOC18100762

elongation factor 1-alpha

HBS1-like protein

uncharacterized LOC102609501

uncharacterized LOC107830579

uncharacterized LOC107810086

uncharacterized LOC107788851

uncharacterized protein

Coexmap

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Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00310	Lysine degradation	3
tae03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03050	Proteasome	2
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	3
bdi03015	mRNA surveillance pathway	2
bdi03040	Spliceosome	2
bdi00240	Pyrimidine metabolism	2
bdi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	5
osa03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	5
sbi04120	Ubiquitin mediated proteolysis	2
sbi04382	Cornified envelope formation	2
sbi03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	3
gma03015	mRNA surveillance pathway	2
gma00061	Fatty acid biosynthesis	2
gma00071	Fatty acid degradation	2
gma01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	3
gma03015	mRNA surveillance pathway	2
gma04148	Efferocytosis	2
gma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2
sly03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	2
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2
bra03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	4
ppo03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03015	mRNA surveillance pathway	3
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	4
bna00270	Cysteine and methionine metabolism	2
bna00920	Sulfur metabolism	2
bna01200	Carbon metabolism	2
bna01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	4
bna00270	Cysteine and methionine metabolism	2
bna00920	Sulfur metabolism	2
bna01200	Carbon metabolism	2
bna01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	5
bna00270	Cysteine and methionine metabolism	2
bna00920	Sulfur metabolism	2
bna01200	Carbon metabolism	2
bna01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	2
cit01200	Carbon metabolism	2
cit01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	4
nta03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	5

Expression

Expression pattern

Entrez Gene ID^*

123190335

123055211

123191047

123428344

123427772

100826934

100840685

4337409

4326095

4336848

103642014

103645758

8071103

8085873

830928

100798594

100801724

101256564

101264306

103855879

103850312

100262342

7458736

18100762

11406169

107937919

107902013

107961757

106430228

111202786

106383222

102603749

102586109

102609501

107830579

107810086

107788851

5719048

The preparation time of this page was 0.1 [sec].


Species	tae	hvu	bdi	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	2	2	3	2	2	1	2	2	2	1	2	1	3	3	2	1	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123047409 (tae-r.2 coexpression data)

Top 50 enrichment test to 123047409 (tae-r.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**