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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123059442   protein RETICULATA-RELATED 4, chloroplastic 
 osa-u.5   4338668   protein RETICULATA-RELATED 4, chloroplastic 
 osa-u.5   4325382   protein RETICULATA-RELATED 4, chloroplastic 
 zma-u.5   100276525   uncharacterized LOC100276525 
 zma-u.5   100275802   uncharacterized LOC100275802 
 ath-u.5   AT5G12470   UvrABC system C protein, putative (DUF3411) 
 gma-u.5   100796187   protein RETICULATA-RELATED 4, chloroplastic 
 gma-u.5   100801687   protein RETICULATA-RELATED 4, chloroplastic 
 gma-u.5   100808020   protein RETICULATA-RELATED 4, chloroplastic 
 sly-u.5   101245023   protein RETICULATA-RELATED 4, chloroplastic 
 sly-u.5   101256709   protein RETICULATA-RELATED 4, chloroplastic 
 vvi-u.5   100265633   protein RETICULATA-RELATED 4, chloroplastic 
 vvi-u.5   100255131   protein RETICULATA-RELATED 4, chloroplastic 
 ppo-u.5   7463833   protein RETICULATA-RELATED 4, chloroplastic 
 ppo-u.5   7467374   protein RETICULATA-RELATED 4, chloroplastic 
 ppo-u.5   7485744   protein RETICULATA-RELATED 4, chloroplastic 
 mtr-u.5   25488788   protein RETICULATA-RELATED 4, chloroplastic 
 mtr-u.5   25479594   protein RETICULATA-RELATED 4, chloroplastic 
 mtr-u.5   11441204   protein RETICULATA-RELATED 4, chloroplastic 

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Top 50 coexpressed genes to 123059442 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123059442 (tae-r.2 coexpression data)

CoexMap"123059442"


taeLOC123059442 | Entrez gene ID : 123059442    
Species tae osa zma ath gma sly vvi ppo mtr bdi hvu bra cit bna sbi ghi sot nta cre
Paralog 1 2 2 1 3 2 2 3 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
Protein XP_044337954.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  mito 3  (predict for XP_044337954.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_044337954.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123059442
osa-u.5
for
4338668
osa-u.5
for
4325382
zma-u.5
for
100276525
zma-u.5
for
100275802
ath-u.5
for
AT5G12470
gma-u.5
for
100796187
gma-u.5
for
100801687
gma-u.5
for
100808020
sly-u.5
for
101245023
sly-u.5
for
101256709
vvi-u.5
for
100265633
vvi-u.5
for
100255131
ppo-u.5
for
7463833
ppo-u.5
for
7467374
ppo-u.5
for
7485744
mtr-u.5
for
25488788
mtr-u.5
for
25479594
mtr-u.5
for
11441204


Ortholog ID: 3040
Species tae tae hvu hvu bdi bdi osa osa zma zma sbi sbi ath gma gma sly sly bra bra vvi vvi ppo ppo mtr mtr ghi ghi bna bna sot cit cit nta nta cre
Symbol LOC123076614 LOC123181867 LOC123442207 LOC123439769 LOC100843142 LOC100842132 LOC4325382 LOC4338668 LOC100276525 LOC100275802 LOC8076842 LOC8074089 AT5G12470 LOC100796187 LOC100808020 LOC101256709 LOC101245023 LOC103855981 LOC103846630 LOC100255131 LOC100265633 LOC7485744 LOC7467374 LOC11441204 LOC25488788 LOC107933955 LOC107950398 LOC106372375 LOC106454653 LOC102602697 LOC102631484 LOC102609068 LOC107824461 LOC107791191 CHLRE_03g177350v5
Function* protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic-like protein RETICULATA-RELATED 4, chloroplastic-like protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic uncharacterized LOC100276525 uncharacterized LOC100275802 protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic UvrABC system C protein, putative (DUF3411) protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic-like protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic-like hypothetical protein protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00785 Lipoic acid metabolism 12
tae00010 Glycolysis / Gluconeogenesis 10
tae00620 Pyruvate metabolism 10
tae01200 Carbon metabolism 10
tae00020 Citrate cycle (TCA cycle) 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 6
tae00760 Nicotinate and nicotinamide metabolism 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00061 Fatty acid biosynthesis 2
hvu01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 3
bdi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 3
bdi01230 Biosynthesis of amino acids 2
bdi01240 Biosynthesis of cofactors 2
bdi00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 7
osa00010 Glycolysis / Gluconeogenesis 5
osa00620 Pyruvate metabolism 5
osa01212 Fatty acid metabolism 5
osa01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 6
osa01200 Carbon metabolism 5
osa00710 Carbon fixation by Calvin cycle 4
osa00620 Pyruvate metabolism 4
osa00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01240 Biosynthesis of cofactors 4
zma01230 Biosynthesis of amino acids 3
zma00010 Glycolysis / Gluconeogenesis 2
zma00051 Fructose and mannose metabolism 2
zma00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00710 Carbon fixation by Calvin cycle 7
zma01200 Carbon metabolism 7
zma01230 Biosynthesis of amino acids 5
zma00010 Glycolysis / Gluconeogenesis 3
zma00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 5
sbi03008 Ribosome biogenesis in eukaryotes 2
sbi03040 Spliceosome 2
sbi00020 Citrate cycle (TCA cycle) 2
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 3
ath01230 Biosynthesis of amino acids 3
ath00190 Oxidative phosphorylation 3
ath00010 Glycolysis / Gluconeogenesis 2
ath00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00620 Pyruvate metabolism 9
gma01200 Carbon metabolism 9
gma00061 Fatty acid biosynthesis 6
gma01212 Fatty acid metabolism 6
gma00010 Glycolysis / Gluconeogenesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04814 Motor proteins 5
gma04517 IgSF CAM signaling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 6
sly01230 Biosynthesis of amino acids 4
sly00190 Oxidative phosphorylation 4
sly00260 Glycine, serine and threonine metabolism 3
sly00670 One carbon pool by folate 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00630 Glyoxylate and dicarboxylate metabolism 3
bra00910 Nitrogen metabolism 3
bra01240 Biosynthesis of cofactors 2
bra00220 Arginine biosynthesis 2
bra00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 5
vvi00710 Carbon fixation by Calvin cycle 4
vvi00195 Photosynthesis 3
vvi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 8
vvi04144 Endocytosis 2
vvi04130 SNARE interactions in vesicular transport 2
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 10
ppo00270 Cysteine and methionine metabolism 6
ppo00670 One carbon pool by folate 4
ppo01240 Biosynthesis of cofactors 4
ppo01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 8
ppo00270 Cysteine and methionine metabolism 5
ppo01200 Carbon metabolism 5
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
ppo00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00061 Fatty acid biosynthesis 11
mtr01212 Fatty acid metabolism 11
mtr00620 Pyruvate metabolism 9
mtr01200 Carbon metabolism 9
mtr01240 Biosynthesis of cofactors 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00030 Pentose phosphate pathway 2
mtr01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01240 Biosynthesis of cofactors 4
ghi00531 Glycosaminoglycan degradation 3
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00020 Citrate cycle (TCA cycle) 2
ghi00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00220 Arginine biosynthesis 2
bna00250 Alanine, aspartate and glutamate metabolism 2
bna00630 Glyoxylate and dicarboxylate metabolism 2
bna00910 Nitrogen metabolism 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00230 Purine metabolism 2
sot01232 Nucleotide metabolism 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 3
cit03040 Spliceosome 2
cit04144 Endocytosis 2
cit00250 Alanine, aspartate and glutamate metabolism 2
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 6
cit01200 Carbon metabolism 5
cit00190 Oxidative phosphorylation 4
cit00480 Glutathione metabolism 2
cit00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01200 Carbon metabolism 4
nta00630 Glyoxylate and dicarboxylate metabolism 2
nta00010 Glycolysis / Gluconeogenesis 2
nta00710 Carbon fixation by Calvin cycle 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 8
nta00010 Glycolysis / Gluconeogenesis 4
nta00030 Pentose phosphate pathway 4
nta00051 Fructose and mannose metabolism 4
nta00710 Carbon fixation by Calvin cycle 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01240 Biosynthesis of cofactors 2
cre00230 Purine metabolism 2
cre00670 One carbon pool by folate 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123076614 123181867 123442207 123439769 100843142 100842132 4325382 4338668 100276525 100275802 8076842 8074089 831122 100796187 100808020 101256709 101245023 103855981 103846630 100255131 100265633 7485744 7467374 11441204 25488788 107933955 107950398 106372375 106454653 102602697 102631484 102609068 107824461 107791191 5728834
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