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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_03g177350v5   uncharacterized protein 
 ath-u.5   AT5G12470   UvrABC system C protein, putative (DUF3411) 
 gma-u.5   100796187   protein RETICULATA-RELATED 4, chloroplastic 
 gma-u.5   100801687   protein RETICULATA-RELATED 4, chloroplastic 
 gma-u.5   100808020   protein RETICULATA-RELATED 4, chloroplastic 
 sly-u.5   101245023   protein RETICULATA-RELATED 4, chloroplastic 
 sly-u.5   101256709   protein RETICULATA-RELATED 4, chloroplastic 
 osa-u.5   4338668   protein RETICULATA-RELATED 4, chloroplastic 
 osa-u.5   4325382   protein RETICULATA-RELATED 4, chloroplastic 
 zma-u.5   100276525   uncharacterized LOC100276525 
 zma-u.5   100275802   uncharacterized LOC100275802 
 bra-r.6   103855981   protein RETICULATA-RELATED 4, chloroplastic 
 bra-r.6   103846630   protein RETICULATA-RELATED 4, chloroplastic 
 vvi-u.5   100265633   protein RETICULATA-RELATED 4, chloroplastic 
 vvi-u.5   100255131   protein RETICULATA-RELATED 4, chloroplastic 
 ppo-u.5   7485744   protein RETICULATA-RELATED 4, chloroplastic 
 ppo-u.5   7467374   protein RETICULATA-RELATED 4, chloroplastic 
 ppo-u.5   7463833   protein RETICULATA-RELATED 4, chloroplastic 
 mtr-u.5   25479594   protein RETICULATA-RELATED 4, chloroplastic 
 mtr-u.5   11441204   protein RETICULATA-RELATED 4, chloroplastic 
 mtr-u.5   25488788   protein RETICULATA-RELATED 4, chloroplastic 
 tae-r.2   123059442   protein RETICULATA-RELATED 4, chloroplastic 
 tae-r.2   123054251   protein RETICULATA-RELATED 4, chloroplastic 
 tae-r.2   123066763   protein RETICULATA-RELATED 4, chloroplastic 
 hvu-r.1   123439769   protein RETICULATA-RELATED 4, chloroplastic-like 
 hvu-r.1   123442207   protein RETICULATA-RELATED 4, chloroplastic-like 
 ghi-r.1   107933955   protein RETICULATA-RELATED 4, chloroplastic 
 ghi-r.1   121225319   protein RETICULATA-RELATED 4, chloroplastic 
 ghi-r.1   107954295   protein RETICULATA-RELATED 4, chloroplastic 
 bna-r.1   106372342   protein RETICULATA-RELATED 4, chloroplastic 
 bna-r.1   106454653   protein RETICULATA-RELATED 4, chloroplastic 
 bna-r.1   106431946   protein RETICULATA-RELATED 4, chloroplastic 
 sbi-r.1   8076842   protein RETICULATA-RELATED 4, chloroplastic 
 sbi-r.1   8074089   protein RETICULATA-RELATED 4, chloroplastic 
 sot-r.1   102602697   protein RETICULATA-RELATED 4, chloroplastic 
 cit-r.1   102631484   protein RETICULATA-RELATED 4, chloroplastic-like 
 cit-r.1   102609068   hypothetical protein 
 bdi-r.1   100842132   protein RETICULATA-RELATED 4, chloroplastic 
 bdi-r.1   100843142   protein RETICULATA-RELATED 4, chloroplastic 
 nta-r.1   107765191   protein RETICULATA-RELATED 4, chloroplastic 
 nta-r.1   107775096   protein RETICULATA-RELATED 4, chloroplastic-like 
 nta-r.1   107791191   protein RETICULATA-RELATED 4, chloroplastic 

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Top 50 coexpressed genes to CHLRE_03g177350v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_03g177350v5 (cre-r.1 coexpression data)

CoexMap"5728834"


creCHLRE_03g177350v5 | Entrez gene ID : 5728834      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 3 2 2 2 2 2 3 3 3 2 3 3 2 1 2 2 3
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
Protein XP_001703430.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  nucl 1,  mito 1  (predict for XP_001703430.1)
Subcellular
localization
TargetP
chlo 7,  mito 5  (predict for XP_001703430.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_03g177350v5
ath-u.5
for
AT5G12470
gma-u.5
for
100796187
gma-u.5
for
100801687
gma-u.5
for
100808020
sly-u.5
for
101245023
sly-u.5
for
101256709
osa-u.5
for
4338668
osa-u.5
for
4325382
zma-u.5
for
100276525
zma-u.5
for
100275802
bra-r.6
for
103855981
bra-r.6
for
103846630
vvi-u.5
for
100265633
vvi-u.5
for
100255131
ppo-u.5
for
7485744
ppo-u.5
for
7467374
ppo-u.5
for
7463833
mtr-u.5
for
25479594
mtr-u.5
for
11441204
mtr-u.5
for
25488788
tae-r.2
for
123059442
tae-r.2
for
123054251
tae-r.2
for
123066763
hvu-r.1
for
123439769
hvu-r.1
for
123442207
ghi-r.1
for
107933955
ghi-r.1
for
121225319
ghi-r.1
for
107954295
bna-r.1
for
106372342
bna-r.1
for
106454653
bna-r.1
for
106431946
sbi-r.1
for
8076842
sbi-r.1
for
8074089
sot-r.1
for
102602697
cit-r.1
for
102631484
cit-r.1
for
102609068
bdi-r.1
for
100842132
bdi-r.1
for
100843142
nta-r.1
for
107765191
nta-r.1
for
107775096
nta-r.1
for
107791191


Ortholog ID: 3040
Species cre ath gma gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo ppo mtr mtr mtr tae tae tae hvu hvu ghi ghi ghi bna bna bna sbi sbi sot cit cit bdi bdi nta nta nta
Symbol CHLRE_03g177350v5 AT5G12470 LOC100796187 LOC100801687 LOC100808020 LOC101245023 LOC101256709 LOC4338668 LOC4325382 LOC100276525 LOC100275802 LOC103855981 LOC103846630 LOC100265633 LOC100255131 LOC7485744 LOC7467374 LOC7463833 LOC25479594 LOC11441204 LOC25488788 LOC123076614 LOC123130990 LOC123181867 LOC123439769 LOC123442207 LOC107933955 LOC107950398 LOC107900768 LOC106454653 LOC106431946 LOC106372375 LOC8076842 LOC8074089 LOC102602697 LOC102631484 LOC102609068 LOC100842132 LOC100843142 LOC107775096 LOC107791191 LOC107824461
Function* uncharacterized protein UvrABC system C protein, putative (DUF3411) protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic uncharacterized LOC100276525 uncharacterized LOC100275802 protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic-like protein RETICULATA-RELATED 4, chloroplastic-like protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic-like protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic-like hypothetical protein protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic-like protein RETICULATA-RELATED 4, chloroplastic protein RETICULATA-RELATED 4, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01240 Biosynthesis of cofactors 2
cre00230 Purine metabolism 2
cre00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 3
ath01230 Biosynthesis of amino acids 3
ath00190 Oxidative phosphorylation 3
ath00010 Glycolysis / Gluconeogenesis 2
ath00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00620 Pyruvate metabolism 9
gma01200 Carbon metabolism 9
gma00061 Fatty acid biosynthesis 6
gma01212 Fatty acid metabolism 6
gma00010 Glycolysis / Gluconeogenesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04814 Motor proteins 5
gma04517 IgSF CAM signaling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 6
sly01230 Biosynthesis of amino acids 4
sly00190 Oxidative phosphorylation 4
sly00260 Glycine, serine and threonine metabolism 3
sly00670 One carbon pool by folate 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 6
osa01200 Carbon metabolism 5
osa00710 Carbon fixation by Calvin cycle 4
osa00620 Pyruvate metabolism 4
osa00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 7
osa00010 Glycolysis / Gluconeogenesis 5
osa00620 Pyruvate metabolism 5
osa01212 Fatty acid metabolism 5
osa01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01240 Biosynthesis of cofactors 4
zma01230 Biosynthesis of amino acids 3
zma00010 Glycolysis / Gluconeogenesis 2
zma00051 Fructose and mannose metabolism 2
zma00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00710 Carbon fixation by Calvin cycle 7
zma01200 Carbon metabolism 7
zma01230 Biosynthesis of amino acids 5
zma00010 Glycolysis / Gluconeogenesis 3
zma00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00630 Glyoxylate and dicarboxylate metabolism 3
bra00910 Nitrogen metabolism 3
bra01240 Biosynthesis of cofactors 2
bra00220 Arginine biosynthesis 2
bra00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 8
vvi04144 Endocytosis 2
vvi04130 SNARE interactions in vesicular transport 2
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 5
vvi00710 Carbon fixation by Calvin cycle 4
vvi00195 Photosynthesis 3
vvi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 10
ppo00270 Cysteine and methionine metabolism 6
ppo00670 One carbon pool by folate 4
ppo01240 Biosynthesis of cofactors 4
ppo01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 8
ppo00270 Cysteine and methionine metabolism 5
ppo01200 Carbon metabolism 5
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
ppo00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 5
ppo00630 Glyoxylate and dicarboxylate metabolism 4
ppo00260 Glycine, serine and threonine metabolism 3
ppo00710 Carbon fixation by Calvin cycle 3
ppo00480 Glutathione metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 3
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00061 Fatty acid biosynthesis 11
mtr01212 Fatty acid metabolism 11
mtr00620 Pyruvate metabolism 9
mtr01200 Carbon metabolism 9
mtr01240 Biosynthesis of cofactors 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00030 Pentose phosphate pathway 2
mtr01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00785 Lipoic acid metabolism 12
tae00010 Glycolysis / Gluconeogenesis 10
tae00620 Pyruvate metabolism 10
tae01200 Carbon metabolism 10
tae00020 Citrate cycle (TCA cycle) 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 7
tae00760 Nicotinate and nicotinamide metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 6
tae00760 Nicotinate and nicotinamide metabolism 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00061 Fatty acid biosynthesis 2
hvu01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01240 Biosynthesis of cofactors 4
ghi00531 Glycosaminoglycan degradation 3
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00020 Citrate cycle (TCA cycle) 2
ghi00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00220 Arginine biosynthesis 2
bna00250 Alanine, aspartate and glutamate metabolism 2
bna00630 Glyoxylate and dicarboxylate metabolism 2
bna00910 Nitrogen metabolism 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 5
sbi03008 Ribosome biogenesis in eukaryotes 2
sbi03040 Spliceosome 2
sbi00020 Citrate cycle (TCA cycle) 2
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00230 Purine metabolism 2
sot01232 Nucleotide metabolism 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 3
cit03040 Spliceosome 2
cit04144 Endocytosis 2
cit00250 Alanine, aspartate and glutamate metabolism 2
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 6
cit01200 Carbon metabolism 5
cit00190 Oxidative phosphorylation 4
cit00480 Glutathione metabolism 2
cit00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 3
bdi01230 Biosynthesis of amino acids 2
bdi01240 Biosynthesis of cofactors 2
bdi00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 3
bdi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 14
nta00010 Glycolysis / Gluconeogenesis 2
nta00030 Pentose phosphate pathway 2
nta00051 Fructose and mannose metabolism 2
nta00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 8
nta00010 Glycolysis / Gluconeogenesis 4
nta00030 Pentose phosphate pathway 4
nta00051 Fructose and mannose metabolism 4
nta00710 Carbon fixation by Calvin cycle 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01200 Carbon metabolism 4
nta00630 Glyoxylate and dicarboxylate metabolism 2
nta00010 Glycolysis / Gluconeogenesis 2
nta00710 Carbon fixation by Calvin cycle 2
nta01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5728834 831122 100796187 100801687 100808020 101245023 101256709 4338668 4325382 100276525 100275802 103855981 103846630 100265633 100255131 7485744 7467374 7463833 25479594 11441204 25488788 123076614 123130990 123181867 123439769 123442207 107933955 107950398 107900768 106454653 106431946 106372375 8076842 8074089 102602697 102631484 102609068 100842132 100843142 107775096 107791191 107824461
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