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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   104582865   pentatricopeptide repeat-containing protein At3g58590 
 osa-u.5   9271701   pentatricopeptide repeat-containing protein At3g58590 
 zma-u.5   103651197   pentatricopeptide repeat-containing protein At3g58590 
 ath-u.5   AT3G58590   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5   100781755   pentatricopeptide repeat-containing protein At3g58590 
 sly-u.5   101267541   pentatricopeptide repeat-containing protein At3g58590 
 bra-r.6   103862972   pentatricopeptide repeat-containing protein At3g58590 
 vvi-u.5   100247242   pentatricopeptide repeat-containing protein At3g58590 
 ppo-u.5   7467460   pentatricopeptide repeat-containing protein At3g58590 
 mtr-u.5   25495440   pentatricopeptide repeat-containing protein At3g58590 
 ghi-r.1   107959865   pentatricopeptide repeat-containing protein At3g58590 
 ghi-r.1   107955130   pentatricopeptide repeat-containing protein At3g58590 
 sot-r.1   107060869   pentatricopeptide repeat-containing protein At3g58590-like 
 sot-r.1   107060870   pentatricopeptide repeat-containing protein At3g58590-like 
 cit-r.1   102614011   pentatricopeptide repeat-containing protein At3g58590 
 nta-r.1   107816118   pentatricopeptide repeat-containing protein At3g58590-like 
 nta-r.1   107793954   pentatricopeptide repeat-containing protein At3g58590 

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Top 50 coexpressed genes to 104582865 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 104582865 (bdi-r.1 coexpression data)

CoexMap"123062089"


taeLOC123062089 | Entrez gene ID : 123062089    
Species bdi osa zma ath gma sly bra vvi ppo mtr ghi sot cit nta cre sbi tae bna hvu
Paralog 1 1 1 1 1 1 1 1 1 1 2 2 1 2 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (1066 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (4004 genes)  IEA  
GO:0005515 [list] [network] protein binding  (16249 genes)  IEA  
Protein XP_044341363.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for XP_044341363.1)
Subcellular
localization
TargetP
chlo 4  (predict for XP_044341363.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
104582865
osa-u.5
for
9271701
zma-u.5
for
103651197
ath-u.5
for
AT3G58590
gma-u.5
for
100781755
sly-u.5
for
101267541
bra-r.6
for
103862972
vvi-u.5
for
100247242
ppo-u.5
for
7467460
mtr-u.5
for
25495440
ghi-r.1
for
107959865
ghi-r.1
for
107955130
sot-r.1
for
107060869
sot-r.1
for
107060870
cit-r.1
for
102614011
nta-r.1
for
107816118
nta-r.1
for
107793954


Ortholog ID: 10831
Species bdi osa zma ath gma sly bra vvi ppo mtr ghi ghi sot sot cit nta nta
Symbol LOC104582865 LOC9271701 LOC103651197 AT3G58590 LOC100781755 LOC101267541 LOC103862972 LOC100247242 LOC7467460 LOC25495440 LOC107959865 LOC107955130 LOC107060869 LOC107060870 LOC102614011 LOC107816118 LOC107793954
Function* pentatricopeptide repeat-containing protein At3g58590 pentatricopeptide repeat-containing protein At3g58590 pentatricopeptide repeat-containing protein At3g58590 Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At3g58590 pentatricopeptide repeat-containing protein At3g58590 pentatricopeptide repeat-containing protein At3g58590 pentatricopeptide repeat-containing protein At3g58590 pentatricopeptide repeat-containing protein At3g58590 pentatricopeptide repeat-containing protein At3g58590 pentatricopeptide repeat-containing protein At3g58590 pentatricopeptide repeat-containing protein At3g58590 pentatricopeptide repeat-containing protein At3g58590-like pentatricopeptide repeat-containing protein At3g58590-like pentatricopeptide repeat-containing protein At3g58590 pentatricopeptide repeat-containing protein At3g58590-like pentatricopeptide repeat-containing protein At3g58590
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 2
osa00240 Pyrimidine metabolism 2
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 104582865 9271701 103651197 825028 100781755 101267541 103862972 100247242 7467460 25495440 107959865 107955130 107060869 107060870 102614011 107816118 107793954
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