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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123068462   RNA polymerase II degradation factor 1 
 osa-u.5   4325473   leucine-rich repeat extensin-like protein 2 
 zma-u.5   103649801   leucine-rich repeat extensin-like protein 2 
 zma-u.5   100279440   Octicosapeptide/Phox/Bem1p family protein 
 ath-u.5   PDE331   Octicosapeptide/Phox/Bem1p family protein 
 ath-u.5   AT3G18230   Octicosapeptide/Phox/Bem1p family protein 
 gma-u.5   100805172   uncharacterized LOC100805172 
 gma-u.5   100797907   uncharacterized LOC100797907 
 gma-u.5   100775954   neurogenic protein mastermind 
 sly-u.5   101244569   uncharacterized LOC101244569 
 sly-u.5   101268863   protein PAL OF QUIRKY 
 sly-u.5   101252579   RAF-like serine/threonine-protein kinase PRAF 
 vvi-u.5   100250808   protein PAL OF QUIRKY 
 ppo-u.5   7482856   uncharacterized LOC7482856 
 ppo-u.5   7459817   uncharacterized LOC7459817 
 mtr-u.5   25485469   putative mediator of RNA polymerase II transcription subunit 12 
 mtr-u.5   11423547   uncharacterized LOC11423547 

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Top 50 coexpressed genes to 123068462 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123068462 (tae-r.2 coexpression data)

CoexMap"123068462"


taeLOC123068462 | Entrez gene ID : 123068462    
Species tae osa zma ath gma sly vvi ppo mtr bdi hvu bra cit bna sbi ghi sot nta cre
Paralog 1 1 2 2 3 3 1 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (16249 genes)  IEA  
Protein XP_044346978.1 [sequence] [blastp]
XP_044346979.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_044346978.1)
nucl 10  (predict for XP_044346979.1)
Subcellular
localization
TargetP
other 8,  chlo 3  (predict for XP_044346978.1)
other 8,  chlo 3  (predict for XP_044346979.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123068462
osa-u.5
for
4325473
zma-u.5
for
103649801
zma-u.5
for
100279440
ath-u.5
for
PDE331
ath-u.5
for
AT3G18230
gma-u.5
for
100805172
gma-u.5
for
100797907
gma-u.5
for
100775954
sly-u.5
for
101244569
sly-u.5
for
101268863
sly-u.5
for
101252579
vvi-u.5
for
100250808
ppo-u.5
for
7482856
ppo-u.5
for
7459817
mtr-u.5
for
25485469
mtr-u.5
for
11423547


Ortholog ID: 2606
Species tae tae hvu bdi osa zma zma sbi ath ath gma gma sly sly bra bra vvi ppo mtr ghi ghi bna sot sot cit nta
Symbol LOC123059998 LOC123068462 LOC123442587 LOC100836637 LOC4325473 LOC103649801 LOC100279440 LOC8060830 PDE331 AT3G18230 LOC100784396 LOC100775954 LOC101268863 LOC101244569 LOC103838209 LOC103839502 LOC100250808 LOC7482856 LOC11423547 LOC107926629 LOC107903879 BNAA09G18520D LOC102590490 LOC102587767 LOC102609615 LOC107784491
Function* RNA polymerase II degradation factor 1 RNA polymerase II degradation factor 1 ataxin-2 homolog trithorax group protein osa leucine-rich repeat extensin-like protein 2 leucine-rich repeat extensin-like protein 2 Octicosapeptide/Phox/Bem1p family protein RNA polymerase II degradation factor 1 Octicosapeptide/Phox/Bem1p family protein Octicosapeptide/Phox/Bem1p family protein neurogenic protein mastermind neurogenic protein mastermind protein PAL OF QUIRKY uncharacterized LOC101244569 uncharacterized LOC103838209 R3H domain-containing protein 2 protein PAL OF QUIRKY uncharacterized LOC7482856 uncharacterized LOC11423547 probable serine/threonine-protein kinase yakA uncharacterized LOC107903879 uncharacterized BNAA09G18520D uncharacterized LOC102590490 activating signal cointegrator 1 complex subunit 2 homolog uncharacterized LOC102609615 uncharacterized LOC107784491
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 4
bdi04016 MAPK signaling pathway - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03250 Viral life cycle - HIV-1 2
gma03272 Virion - Hepatitis viruses 2
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00010 Glycolysis / Gluconeogenesis 3
bra00051 Fructose and mannose metabolism 3
bra00052 Galactose metabolism 3
bra00500 Starch and sucrose metabolism 3
bra00520 Amino sugar and nucleotide sugar metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03018 RNA degradation 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00541 Biosynthesis of various nucleotide sugars 3
bna01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 3
sot03250 Viral life cycle - HIV-1 2
sot03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 3
sot03250 Viral life cycle - HIV-1 2
sot03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123059998 123068462 123442587 100836637 4325473 103649801 100279440 8060830 814647 821351 100784396 100775954 101268863 101244569 103838209 103839502 100250808 7482856 11423547 107926629 107903879 106432059 102590490 102587767 102609615 107784491
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