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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123079905   DNA repair protein XRCC2 homolog 
 bdi-r.1   100842954   DNA repair protein XRCC2 homolog 
 zma-u.5   100383265   uncharacterized LOC100383265 
 sbi-r.1   8060990   DNA repair protein XRCC2 homolog 
 ath-u.5   XRCC2   homolog of X-ray repair cross complementing 2 (XRCC2) 
 gma-u.5   100818578   DNA repair protein XRCC2 homolog 
 gma-u.5   100807727   DNA repair protein XRCC2 homolog 
 sly-u.5   101255234   DNA repair protein XRCC2 homolog 
 bra-r.6   103837530   DNA repair protein XRCC2 homolog 
 vvi-u.5   100262890   DNA repair protein XRCC2 homolog 
 ghi-r.1   107918646   DNA repair protein XRCC2 homolog 
 ghi-r.1   107893562   DNA repair protein XRCC2 homolog 
 bna-r.1   106403050   DNA repair protein XRCC2 homolog 
 bna-r.1   106364140   DNA repair protein XRCC2 homolog 
 bna-r.1   106357643   DNA repair protein XRCC2 homolog 
 sot-r.1   102581295   DNA repair protein XRCC2 homolog 
 sot-r.1   102588794   DNA repair protein XRCC2 homolog 
 nta-r.1   107831709   DNA repair protein XRCC2 homolog 
 nta-r.1   107820410   DNA repair protein XRCC2 homolog 
 cre-r.1   CHLRE_06g278174v5   uncharacterized protein 

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Top 50 coexpressed genes to 123079905 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123079905 (tae-r.2 coexpression data)

CoexMap"123071568"


taeLOC123071568 | Entrez gene ID : 123071568    
Species tae bdi zma sbi ath gma sly bra vvi ghi bna sot nta cre ppo cit mtr osa hvu
Paralog 1 1 1 1 1 2 1 1 1 2 3 2 2 1 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG taes03440 [list] [network] Homologous recombination (198 genes)
GO BP
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (222 genes)  IEA  
GO CC
GO:0033063 [list] [network] Rad51B-Rad51C-Rad51D-XRCC2 complex  (13 genes)  IEA  
GO:0005657 [list] [network] replication fork  (142 genes)  IEA  
GO MF
GO:0140664 [list] [network] ATP-dependent DNA damage sensor activity  (73 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (6662 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (7858 genes)  IEA  
Protein XP_044351081.1 [sequence] [blastp]
XP_044351082.1 [sequence] [blastp]
XP_044351083.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 3  (predict for XP_044351081.1)
cyto 6,  nucl 3  (predict for XP_044351082.1)
cyto 6,  nucl 3  (predict for XP_044351083.1)
Subcellular
localization
TargetP
chlo 5,  other 4  (predict for XP_044351081.1)
chlo 5,  other 4  (predict for XP_044351082.1)
chlo 5,  other 4  (predict for XP_044351083.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123079905
bdi-r.1
for
100842954
zma-u.5
for
100383265
sbi-r.1
for
8060990
ath-u.5
for
XRCC2
gma-u.5
for
100818578
gma-u.5
for
100807727
sly-u.5
for
101255234
bra-r.6
for
103837530
vvi-u.5
for
100262890
ghi-r.1
for
107918646
ghi-r.1
for
107893562
bna-r.1
for
106403050
bna-r.1
for
106364140
bna-r.1
for
106357643
sot-r.1
for
102581295
sot-r.1
for
102588794
nta-r.1
for
107831709
nta-r.1
for
107820410
cre-r.1
for
CHLRE_06g278174v5


Ortholog ID: 9194
Species tae bdi zma sbi ath gma gma sly bra vvi ghi ghi bna bna bna sot sot nta nta cre
Symbol LOC123079905 LOC100842954 LOC100383265 LOC8060990 XRCC2 LOC100818578 LOC100807727 LOC101255234 LOC103837530 LOC100262890 LOC107918646 LOC107893562 LOC106403050 LOC106364140 LOC106357643 LOC102581295 LOC102588794 LOC107831709 LOC107820410 CHLRE_06g278174v5
Function* DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog uncharacterized LOC100383265 DNA repair protein XRCC2 homolog homolog of X-ray repair cross complementing 2 (XRCC2) DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03440 Homologous recombination 3
sbi03030 DNA replication 2
sbi03410 Base excision repair 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 5
vvi03440 Homologous recombination 5
vvi03410 Base excision repair 3
vvi03420 Nucleotide excision repair 3
vvi03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 3
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 6
bna03015 mRNA surveillance pathway 6
bna03440 Homologous recombination 3
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 6
bna03015 mRNA surveillance pathway 6
bna03440 Homologous recombination 3
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 4
sot03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03430 Mismatch repair 3
cre03030 DNA replication 2
cre03410 Base excision repair 2
cre03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123079905 100842954 100383265 8060990 836573 100818578 100807727 101255234 103837530 100262890 107918646 107893562 106403050 106364140 106357643 102581295 102588794 107831709 107820410 5723645
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