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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123078110   geranylgeranyl diphosphate reductase, chloroplastic 
 osa-u.5   4326207   uncharacterized LOC4326207 
 osa-u.5   4330711   geranylgeranyl diphosphate reductase, chloroplastic-like 
 zma-u.5   103649981   geranylgeranyl diphosphate reductase, chloroplastic-like 
 zma-u.5   100283007   geranylgeranyl hydrogenase1 
 ath-u.5   AT1G74470   Pyridine nucleotide-disulfide oxidoreductase family protein 
 gma-u.5   100779933   geranylgeranyl diphosphate reductase, chloroplastic 
 gma-u.5   100787525   geranylgeranyl diphosphate reductase, chloroplastic 
 gma-u.5   100814603   geranylgeranyl diphosphate reductase, chloroplastic 
 sly-u.5   101266160   geranylgeranyl diphosphate reductase, chloroplastic-like 
 sly-u.5   101262299   geranylgeranyl diphosphate reductase, chloroplastic 
 vvi-u.5   100253115   geranylgeranyl diphosphate reductase, chloroplastic 
 vvi-u.5   100243277   geranylgeranyl diphosphate reductase, chloroplastic 
 ppo-u.5   7484745   geranylgeranyl diphosphate reductase, chloroplastic 
 ppo-u.5   18098056   geranylgeranyl diphosphate reductase, chloroplastic 
 mtr-u.5   120580108   geranylgeranyl diphosphate reductase, chloroplastic 
 mtr-u.5   11429848   geranylgeranyl diphosphate reductase, chloroplastic 

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Top 50 coexpressed genes to 123078110 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123078110 (tae-r.2 coexpression data)

CoexMap"123078110"


taeLOC123078110 | Entrez gene ID : 123078110    
Species tae osa zma ath gma sly vvi ppo mtr sbi nta bra cre hvu cit bdi sot bna ghi
Paralog 1 2 2 1 3 2 2 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG taes00860 [list] [network] Porphyrin metabolism (169 genes)
taes00900 [list] [network] Terpenoid backbone biosynthesis (187 genes)
GO BP
GO:0015995 [list] [network] chlorophyll biosynthetic process  (34 genes)  IEA  
GO:0015979 [list] [network] photosynthesis  (342 genes)  IEA  
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (303 genes)  IEA  
GO MF
GO:0045550 [list] [network] geranylgeranyl reductase activity  (6 genes)  IEA  
GO:0016628 [list] [network] oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor  (101 genes)  IEA  
GO:0071949 [list] [network] FAD binding  (296 genes)  IEA  
Protein XP_044356446.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_044356446.1)
Subcellular
localization
TargetP
chlo 5,  mito 3  (predict for XP_044356446.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123078110

.
osa-u.5
for
4326207

.
osa-u.5
for
4330711

.
zma-u.5
for
103649981

.
zma-u.5
for
100283007

.
ath-u.5
for
AT1G74470

.
gma-u.5
for
100779933

.
gma-u.5
for
100787525

.
gma-u.5
for
100814603

.
sly-u.5
for
101266160

.
sly-u.5
for
101262299

.
vvi-u.5
for
100253115

.
vvi-u.5
for
100243277

.
ppo-u.5
for
7484745

.
ppo-u.5
for
18098056

.
mtr-u.5
for
120580108

.
mtr-u.5
for
11429848

.


Ortholog ID: 3753
Species ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol AT1G74470 LOC100814603 LOC100787525 LOC101262299 LOC101266160 LOC4326207 LOC4330711 LOC100283007 LOC103649981 LOC103852907 LOC103831923 LOC100243277 LOC100253115 LOC7484745 LOC18098056 LOC120580108 LOC11429848 LOC123061037 LOC123128382 LOC123443461 LOC123401542 LOC107891506 LOC107897682 LOC106430268 LOC106381375 CHLRE_01g050950v5 LOC8085832 LOC8075711 LOC102598599 LOC102599900 LOC102606922 LOC102628832 LOC100821798 LOC100836154 LOC107783257 LOC107803012
Function* Pyridine nucleotide-disulfide oxidoreductase family protein geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic-like uncharacterized LOC4326207 geranylgeranyl diphosphate reductase, chloroplastic-like geranylgeranyl hydrogenase1 geranylgeranyl diphosphate reductase, chloroplastic-like geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic-like geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic uncharacterized protein geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic-like geranylgeranyl diphosphate reductase, chloroplastic-like geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 6
ath00196 Photosynthesis - antenna proteins 4
ath00195 Photosynthesis 3
ath00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 9
gma00900 Terpenoid backbone biosynthesis 3
gma00195 Photosynthesis 3
gma00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00860 Porphyrin metabolism 8
sly00196 Photosynthesis - antenna proteins 3
sly00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00670 One carbon pool by folate 4
sly01230 Biosynthesis of amino acids 4
sly01240 Biosynthesis of cofactors 3
sly00270 Cysteine and methionine metabolism 3
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00860 Porphyrin metabolism 4
osa00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00860 Porphyrin metabolism 6
zma00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 4
bra00860 Porphyrin metabolism 3
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00860 Porphyrin metabolism 5
bra00710 Carbon fixation by Calvin cycle 3
bra01200 Carbon metabolism 3
bra00196 Photosynthesis - antenna proteins 2
bra00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 5
vvi04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 7
ppo00196 Photosynthesis - antenna proteins 6
ppo00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 3
tae00900 Terpenoid backbone biosynthesis 3
tae02010 ABC transporters 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 12
tae00196 Photosynthesis - antenna proteins 6
tae00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00860 Porphyrin metabolism 5
hvu00195 Photosynthesis 3
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00860 Porphyrin metabolism 2
ghi00900 Terpenoid backbone biosynthesis 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00860 Porphyrin metabolism 6
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 4
bna00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 4
bna00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00860 Porphyrin metabolism 13
cre01240 Biosynthesis of cofactors 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00196 Photosynthesis - antenna proteins 12
sbi00195 Photosynthesis 4
sbi00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00196 Photosynthesis - antenna proteins 7
sot00860 Porphyrin metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 10
cit00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03083 Polycomb repressive complex 3
bdi04120 Ubiquitin mediated proteolysis 3
bdi04141 Protein processing in endoplasmic reticulum 3
bdi00100 Steroid biosynthesis 3
bdi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00860 Porphyrin metabolism 5
bdi00195 Photosynthesis 4
bdi00196 Photosynthesis - antenna proteins 3
bdi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 8
nta00900 Terpenoid backbone biosynthesis 4
nta00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 6
nta03010 Ribosome 6
nta00860 Porphyrin metabolism 2
nta00900 Terpenoid backbone biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843788 100814603 100787525 101262299 101266160 4326207 4330711 100283007 103649981 103852907 103831923 100243277 100253115 7484745 18098056 120580108 11429848 123061037 123128382 123443461 123401542 107891506 107897682 106430268 106381375 5715748 8085832 8075711 102598599 102599900 102606922 102628832 100821798 100836154 107783257 107803012
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