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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123097872   organelle RRM domain-containing protein 6, chloroplastic 
 osa-u.5   4343831   glycine-rich RNA-binding protein 2, mitochondrial 
 osa-u.5   9269592   organelle RRM domain-containing protein 6, chloroplastic 
 osa-u.5   9269210   glycine-rich RNA-binding protein 4, mitochondrial 
 zma-u.5   100194217   responsive to abscisic acid15 
 zma-u.5   100191295   Glycine-rich RNA-binding protein 3 mitochondrial 
 zma-u.5   100283778   uncharacterized LOC100283778 
 ath-u.5   CCR1   cold, circadian rhythm, and RNA binding 1 
 ath-u.5   AT1G73530   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   GR-RBP3   glycine-rich RNA-binding protein 3 
 gma-u.5   100806292   glycine-rich RNA-binding protein GRP1A 
 gma-u.5   100799124   heterogeneous nuclear ribonucleoprotein D-like 
 gma-u.5   112998378   glycine-rich RNA-binding protein GRP1A-like 
 sly-u.5   101266771   glycine-rich RNA-binding protein 
 sly-u.5   GRP1   glycine-rich RNA-binding protein-like 
 sly-u.5   101262262   glycine-rich RNA-binding protein 
 vvi-u.5   100853676   glycine-rich RNA-binding protein GRP2A 
 vvi-u.5   100854881   small RNA-binding protein 11, chloroplastic 
 vvi-u.5   100263981   small RNA-binding protein 11, chloroplastic 
 ppo-u.5   7487102   glycine-rich RNA-binding protein 4, mitochondrial 
 ppo-u.5   18102138   glycine-rich RNA-binding protein 7 
 mtr-u.5   11420057   glycine-rich RNA-binding protein GRP1A 
 mtr-u.5   11428326   glycine-rich RNA-binding protein 3, mitochondrial 

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Top 50 coexpressed genes to 123097872 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123097872 (tae-r.2 coexpression data)

CoexMap"123097872"


taeLOC123097872 | Entrez gene ID : 123097872    
Species tae osa zma ath gma sly vvi ppo mtr bdi hvu bra cit bna sbi ghi sot nta cre
Paralog 1 3 3 3 3 3 3 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (4004 genes)  IEA  
Protein XP_044375655.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 5,  cyto 3,  chlo_mito 3  (predict for XP_044375655.1)
Subcellular
localization
TargetP
mito 8  (predict for XP_044375655.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123097872
osa-u.5
for
4343831
osa-u.5
for
9269592
osa-u.5
for
9269210
zma-u.5
for
100194217
zma-u.5
for
100191295
zma-u.5
for
100283778
ath-u.5
for
CCR1
ath-u.5
for
AT1G73530
ath-u.5
for
GR-RBP3
gma-u.5
for
100806292
gma-u.5
for
100799124
gma-u.5
for
112998378
sly-u.5
for
101266771
sly-u.5
for
GRP1
sly-u.5
for
101262262
vvi-u.5
for
100853676
vvi-u.5
for
100854881
vvi-u.5
for
100263981
ppo-u.5
for
7487102
ppo-u.5
for
18102138
mtr-u.5
for
11420057
mtr-u.5
for
11428326


Ortholog ID: 75
Species tae tae hvu hvu bdi osa osa zma zma sbi sbi ath gma gma sly sly bra bra vvi vvi ppo ppo mtr mtr ghi ghi bna bna sot sot cit cit nta nta cre cre
Symbol LOC123134221 LOC123097872 LOC123403078 LOC123400027 LOC100842305 LOC4343831 LOC4352279 LOC542725 LOC100284207 LOC8075292 LOC110434104 AT3G08000 LOC100796704 LOC100305467 LOC101245474 LOC101254436 LOC103835157 LOC103851541 LOC100246039 LOC100263981 LOC18109442 LOC7485193 LOC25497346 LOC11436305 LOC107960836 LOC107952135 LOC106365965 LOC106439949 LOC102587142 LOC102581514 LOC102608923 LOC102627364 LOC107759364 LOC142161681 CHLRE_09g392350v5 CHLRE_02g079400v5
Function* glycine-rich RNA-binding protein organelle RRM domain-containing protein 6, chloroplastic glycine-rich RNA-binding protein-like glycine-rich RNA-binding protein blt801-like glycine-rich RNA-binding protein blt801 glycine-rich RNA-binding protein 2, mitochondrial glycine-rich RNA-binding protein blt801 uncharacterized LOC542725 glycine-rich RNA-binding protein 7 small RNA-binding protein 11, chloroplastic glycine-rich RNA-binding protein 4, mitochondrial-like RNA-binding (RRM/RBD/RNP motifs) family protein RNA recognition motif-containing protein putative glycine-rich RNA binding protein glycine-rich RNA-binding protein 4, mitochondrial glycine-rich RNA-binding protein 2, mitochondrial glycine-rich RNA-binding protein 10 cold-inducible RNA-binding protein organelle RRM domain-containing protein 6, chloroplastic small RNA-binding protein 11, chloroplastic small RNA-binding protein 11, chloroplastic organelle RRM domain-containing protein 6, chloroplastic organelle RRM domain-containing protein 6, chloroplastic glycine-rich RNA-binding protein 2, mitochondrial small RNA-binding protein 11, chloroplastic glycine-rich RNA-binding protein GRP1A glycine-rich RNA-binding protein GRP1A glycine-rich RNA-binding protein 3, mitochondrial glycine-rich RNA-binding protein glycine-rich RNA-binding protein 4, mitochondrial small RNA-binding protein 11, chloroplastic organelle RRM domain-containing protein 2, mitochondrial-like glycine-rich RNA-binding protein 2, mitochondrial-like glycine-rich RNA-binding protein-like uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 5
tae03420 Nucleotide excision repair 5
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 3
zma03010 Ribosome 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04145 Phagosome 3
sbi04517 IgSF CAM signaling 3
sbi04814 Motor proteins 3
sbi00520 Amino sugar and nucleotide sugar metabolism 2
sbi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 9
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00100 Steroid biosynthesis 4
ghi00940 Phenylpropanoid biosynthesis 3
ghi03013 Nucleocytoplasmic transport 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi00905 Brassinosteroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna04626 Plant-pathogen interaction 4
bna03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
sot03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 15
nta03008 Ribosome biogenesis in eukaryotes 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 7
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123134221 123097872 123403078 123400027 100842305 4343831 4352279 542725 100284207 8075292 110434104 819991 100796704 100305467 101245474 101254436 103835157 103851541 100246039 100263981 18109442 7485193 25497346 11436305 107960836 107952135 106365965 106439949 102587142 102581514 102608923 102627364 107759364 142161681 5720095 5727272
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