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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123104285   cyclin-C1-1 
 tae-r.2   123112545   cyclin-C1-1 
 tae-r.2   123122041   cyclin-C1-1 
 tae-r.2   123128708   cyclin-C1-1 
 hvu-r.1   123399710   cyclin-C1-1-like 
 hvu-r.1   123406332   cyclin-C1-1 
 bdi-r.1   100839042   cyclin-C1-1 
 bdi-r.1   100821206   cyclin-C1-1 
 osa-u.5   9272663   cyclin-C1-1-like 
 zma-u.5   100193909   uncharacterized LOC100193909 
 sbi-r.1   8054773   cyclin-C1-1 
 ath-u.5   AT5G48630   Cyclin family protein 
 ath-u.5   AT5G48640   Cyclin family protein 
 gma-u.5   100816019   cyclin-C1-2 
 gma-u.5   100784345   cyclin-C1-2 
 sly-u.5   101252599   cyclin-C1-2 
 bra-r.6   103874972   cyclin-C1-1 
 bra-r.6   103854550   cyclin-C1-2 
 vvi-u.5   100245896   cyclin-C1-2 
 ppo-u.5   7464420   cyclin-C1-2 
 ppo-u.5   7471166   cyclin-C1-2 
 mtr-u.5   11435941   cyclin-C1-2 
 ghi-r.1   107924662   cyclin-C1-2 
 ghi-r.1   121232163   cyclin-C1-2 
 ghi-r.1   107954051   cyclin-C1-2 
 bna-r.1   106348913   cyclin-C1-1 
 bna-r.1   106349002   cyclin-C1-1 
 bna-r.1   106382268   cyclin-C1-2 
 sot-r.1   102592474   cyclin-C1-2-like 
 cit-r.1   102625453   cyclin-C1-2-like 
 nta-r.1   107800310   cyclin-C1-2 
 nta-r.1   107792600   cyclin-C1-2-like 
 nta-r.1   107799575   cyclin-C1-2-like 
 cre-r.1   CHLRE_03g174476v5   uncharacterized protein 

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Top 50 coexpressed genes to 123104285 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123104285 (tae-r.2 coexpression data)

CoexMap"123104285"


taeLOC123104285 | Entrez gene ID : 123104285    
Species tae hvu bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 4 2 2 1 1 1 2 2 1 2 1 2 1 3 3 1 1 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (1094 genes)  IEA  
GO CC
GO MF
GO:0016538 [list] [network] cyclin-dependent protein serine/threonine kinase regulator activity  (94 genes)  IEA  
Protein XP_044382039.1 [sequence] [blastp]
XP_044382040.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 2,  plas 2,  pero 2,  cyto 1,  cyto_nucl 1,  nucl 1,  chlo_mito 1,  golg_plas 1,  cysk_plas 1,  mito_plas 1  (predict for XP_044382039.1)
chlo 2,  plas 2,  pero 2,  cyto_nucl 1,  chlo_mito 1,  E.R._plas 1,  mito_plas 1  (predict for XP_044382040.1)
Subcellular
localization
TargetP
chlo 7  (predict for XP_044382039.1)
chlo 7  (predict for XP_044382040.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123104285
tae-r.2
for
123112545
tae-r.2
for
123122041
tae-r.2
for
123128708
hvu-r.1
for
123399710
hvu-r.1
for
123406332
bdi-r.1
for
100839042
bdi-r.1
for
100821206
osa-u.5
for
9272663
zma-u.5
for
100193909
sbi-r.1
for
8054773
ath-u.5
for
AT5G48630
ath-u.5
for
AT5G48640
gma-u.5
for
100816019
gma-u.5
for
100784345
sly-u.5
for
101252599
bra-r.6
for
103874972
bra-r.6
for
103854550
vvi-u.5
for
100245896
ppo-u.5
for
7464420
ppo-u.5
for
7471166
mtr-u.5
for
11435941
ghi-r.1
for
107924662
ghi-r.1
for
121232163
ghi-r.1
for
107954051
bna-r.1
for
106348913
bna-r.1
for
106349002
bna-r.1
for
106382268
sot-r.1
for
102592474
cit-r.1
for
102625453
nta-r.1
for
107800310
nta-r.1
for
107792600
nta-r.1
for
107799575
cre-r.1
for
CHLRE_03g174476v5


Ortholog ID: 4800
Species tae tae tae hvu hvu bdi bdi osa zma sbi ath ath gma gma sly bra bra vvi ppo ppo mtr ghi ghi ghi bna bna bna sot cit nta nta nta cre
Symbol LOC123104285 LOC123112545 LOC123138915 LOC123399710 LOC123406332 LOC100839042 LOC100821206 LOC9272663 LOC100193909 LOC8054773 AT5G48630 AT5G48640 LOC100816019 LOC100784345 LOC101252599 LOC103874972 LOC103854550 LOC100245896 LOC7464420 LOC7471166 LOC11435941 LOC121232163 LOC107954051 LOC107912546 LOC106348913 LOC106382268 LOC106382484 LOC102592474 LOC102625453 LOC107792600 LOC107799575 LOC107785372 CHLRE_03g174476v5
Function* cyclin-C1-1 cyclin-C1-1 cyclin-C1-1 cyclin-C1-1-like cyclin-C1-1 cyclin-C1-1 cyclin-C1-1 cyclin-C1-1-like uncharacterized LOC100193909 cyclin-C1-1 Cyclin family protein Cyclin family protein cyclin-C1-2 cyclin-C1-2 cyclin-C1-2 cyclin-C1-1 cyclin-C1-2 cyclin-C1-2 cyclin-C1-2 cyclin-C1-2 cyclin-C1-2 cyclin-C1-2 cyclin-C1-2 cyclin-C1-2 cyclin-C1-1 cyclin-C1-2 cyclin-C1-1 cyclin-C1-2-like cyclin-C1-2-like cyclin-C1-2-like cyclin-C1-2-like cyclin-C1-2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 6
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 6
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04136 Autophagy - other 3
bdi04120 Ubiquitin mediated proteolysis 2
bdi00190 Oxidative phosphorylation 2
bdi04145 Phagosome 2
bdi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 3
bdi04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00600 Sphingolipid metabolism 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04130 SNARE interactions in vesicular transport 2
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
ath04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 3
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 3
ghi03015 mRNA surveillance pathway 2
ghi04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
ghi00760 Nicotinate and nicotinamide metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03083 Polycomb repressive complex 2
bna03008 Ribosome biogenesis in eukaryotes 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 7
bna00230 Purine metabolism 4
bna00261 Monobactam biosynthesis 4
bna00450 Selenocompound metabolism 4
bna00920 Sulfur metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04136 Autophagy - other 4
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04136 Autophagy - other 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
nta03250 Viral life cycle - HIV-1 2
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123104285 123112545 123138915 123399710 123406332 100839042 100821206 9272663 100193909 8054773 834920 834921 100816019 100784345 101252599 103874972 103854550 100245896 7464420 7471166 11435941 121232163 107954051 107912546 106348913 106382268 106382484 102592474 102625453 107792600 107799575 107785372 5728879
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