ATTED-II : GeneCoexpression result

Species	Gene	Description
osa-u.5	9272663	cyclin-C1-1-like
osa-r.6	9272663	cyclin-C1-1-like
osa-m.8	9272663	cyclin-C1-1-like
osa-e.1	9272663	cyclin-C1-1-like
zma-u.5	100193909	uncharacterized LOC100193909
ath-u.5	AT5G48630	Cyclin family protein
ath-u.5	AT5G48640	Cyclin family protein
gma-u.5	100816019	cyclin-C1-2
gma-u.5	100784345	cyclin-C1-2
sly-u.5	101252599	cyclin-C1-2
vvi-u.5	100245896	cyclin-C1-2
ppo-u.5	7464420	cyclin-C1-2
ppo-u.5	7471166	cyclin-C1-2
mtr-u.5	11435941	cyclin-C1-2

functional annotation

KEGG

GO BP

GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II

(110 genes)

IEA

GO CC

GO:0016592 [list] [network] mediator complex	(36 genes)	IEA
GO:0005634 [list] [network] nucleus	(3003 genes)	IEA

GO MF

GO:0016538 [list] [network] cyclin-dependent protein serine/threonine kinase regulator activity

(56 genes)

IEA

Protein

NP_001391861.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, cyto 3, mito 1, plas 1, pero 1, golg 1, golg_plas 1, mito_plas 1

(predict for NP_001391861.1)

Subcellular
localization
TargetP

other 9

(predict for NP_001391861.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 9272663	osa-r.6 for 9272663	osa-m.8 for 9272663	osa-e.1 for 9272663	zma-u.5 for 100193909	ath-u.5 for AT5G48630	ath-u.5 for AT5G48640	gma-u.5 for 100816019	gma-u.5 for 100784345	sly-u.5 for 101252599	vvi-u.5 for 100245896	ppo-u.5 for 7464420	ppo-u.5 for 7471166	mtr-u.5 for 11435941

Ortholog ID: 4800

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

cyclin-C1-1-like

cyclin-C1-1

cyclin-C1-1-like

cyclin-C1-1

uncharacterized LOC100193909

cyclin-C1-1

Cyclin family protein

cyclin-C1-2

cyclin-C1-1

cyclin-C1-2

cyclin-C1-1

cyclin-C1-2-like

cyclin-C1-2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	6
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04136	Autophagy - other	3
bdi04120	Ubiquitin mediated proteolysis	2
bdi00190	Oxidative phosphorylation	2
bdi04145	Phagosome	2
bdi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00190	Oxidative phosphorylation	3
bdi04145	Phagosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00600	Sphingolipid metabolism	2
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04130	SNARE interactions in vesicular transport	2
sbi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	2
ath04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	3
bra00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	3
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	2
ghi00760	Nicotinate and nicotinamide metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03083	Polycomb repressive complex	2
bna03008	Ribosome biogenesis in eukaryotes	2
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04136	Autophagy - other	4
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	2
nta03250	Viral life cycle - HIV-1	2
nta03015	mRNA surveillance pathway	2

Expression

Expression pattern

Entrez Gene ID^*

9272663

123104285

123112545

123399710

123406332

100839042

100821206

100193909

8054773

834920

834921

100816019

100784345

101252599

103874972

103854550

100245896

7471166

7464420

11435941

121232163

107912546

106348913

106382484

102592474

102625453

107799575

107785372

5728879

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 9272663 (osa-u.5 coexpression data)

Top 50 enrichment test to 9272663 (osa-u.5 coexpression data)


Species	osa	zma	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	4	1	2	2	1	1	2	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 9272663 (osa-u.5 coexpression data)

Top 50 enrichment test to 9272663 (osa-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**