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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123111418   mRNA turnover protein 4 homolog 
 tae-r.2   123120506   mRNA turnover protein 4 homolog 
 tae-r.2   123103215   mRNA turnover protein 4 homolog 
 hvu-r.1   123395342   mRNA turnover protein 4 homolog 
 bdi-r.1   100838239   mRNA turnover protein 4 homolog 
 osa-u.5   9270809   uncharacterized LOC9270809 
 osa-u.5   4349548   uncharacterized LOC4349548 
 zma-u.5   100194040   ribosomal protein L10 homolog 
 zma-u.5   100282271   mRNA turnover protein 4 
 sbi-r.1   8079964   mRNA turnover protein 4 homolog 
 sbi-r.1   110429537   mRNA turnover protein 4 homolog 
 ath-u.5   AT1G25260   Ribosomal protein L10 family protein 
 gma-u.5   100305462   ribosomal protein L10 family protein 
 gma-u.5   100500064   ribosomal protein L10 family protein 
 sly-u.5   101262055   uncharacterized LOC101262055 
 bra-r.6   103829138   mRNA turnover protein 4 homolog 
 bra-r.6   103835442   mRNA turnover protein 4 homolog 
 bra-r.6   103840549   mRNA turnover protein 4 homolog 
 vvi-u.5   100244591   uncharacterized LOC100244591 
 ppo-u.5   7485154   uncharacterized LOC7485154 
 ppo-u.5   7490756   uncharacterized LOC7490756 
 mtr-u.5   11418824   mRNA turnover protein 4 homolog 
 ghi-r.1   107925356   mRNA turnover protein 4 homolog 
 ghi-r.1   107921063   mRNA turnover protein 4 homolog 
 bna-r.1   106412206   mRNA turnover protein 4 homolog 
 bna-r.1   106397388   mRNA turnover protein 4 homolog 
 bna-r.1   106367483   mRNA turnover protein 4 homolog 
 sot-r.1   102592687   mRNA turnover protein 4 homolog 
 cit-r.1   102628495   uncharacterized LOC102628495 
 nta-r.1   107807980   uncharacterized LOC107807980 
 nta-r.1   107773865   uncharacterized LOC107773865 
 cre-r.1   CHLRE_06g261700v5   uncharacterized protein 

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Top 50 coexpressed genes to 123111418 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123111418 (tae-r.2 coexpression data)

CoexMap"123111418"


taeLOC123111418 | Entrez gene ID : 123111418    
Species tae hvu bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 3 1 1 2 2 2 1 2 1 3 1 2 1 2 3 1 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000027 [list] [network] ribosomal large subunit assembly  (63 genes)  IEA  
GO:0000956 [list] [network] nuclear-transcribed mRNA catabolic process  (162 genes)  IEA  
GO:0042273 [list] [network] ribosomal large subunit biogenesis  (178 genes)  IEA  
GO:0006364 [list] [network] rRNA processing  (599 genes)  IEA  
GO CC
GO:0030687 [list] [network] preribosome, large subunit precursor  (62 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (603 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (4004 genes)  IEA  
Protein XP_044388148.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  mito 3,  cyto_nucl 3,  nucl_plas 3  (predict for XP_044388148.1)
Subcellular
localization
TargetP
other 8  (predict for XP_044388148.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123111418
tae-r.2
for
123120506
tae-r.2
for
123103215
hvu-r.1
for
123395342
bdi-r.1
for
100838239
osa-u.5
for
9270809
osa-u.5
for
4349548
zma-u.5
for
100194040
zma-u.5
for
100282271
sbi-r.1
for
8079964
sbi-r.1
for
110429537
ath-u.5
for
AT1G25260
gma-u.5
for
100305462
gma-u.5
for
100500064
sly-u.5
for
101262055
bra-r.6
for
103829138
bra-r.6
for
103835442
bra-r.6
for
103840549
vvi-u.5
for
100244591
ppo-u.5
for
7485154
ppo-u.5
for
7490756
mtr-u.5
for
11418824
ghi-r.1
for
107925356
ghi-r.1
for
107921063
bna-r.1
for
106412206
bna-r.1
for
106397388
bna-r.1
for
106367483
sot-r.1
for
102592687
cit-r.1
for
102628495
nta-r.1
for
107807980
nta-r.1
for
107773865
cre-r.1
for
CHLRE_06g261700v5


Ortholog ID: 6141
Species tae tae tae hvu bdi osa osa zma zma sbi sbi ath gma gma sly bra bra bra vvi ppo ppo mtr ghi ghi bna bna bna sot cit nta nta cre
Symbol LOC123111418 LOC123120506 LOC123103215 LOC123395342 LOC100838239 LOC9270809 LOC4349548 LOC100194040 LOC100282271 LOC8079964 LOC110429537 AT1G25260 LOC100305462 LOC100500064 LOC101262055 LOC103829138 LOC103835442 LOC103840549 LOC100244591 LOC7485154 LOC7490756 LOC11418824 LOC107925356 LOC107921063 LOC106412206 LOC106361936 LOC106361875 LOC102592687 LOC102628495 LOC107807980 LOC107773865 CHLRE_06g261700v5
Function* mRNA turnover protein 4 homolog mRNA turnover protein 4 homolog mRNA turnover protein 4 homolog mRNA turnover protein 4 homolog mRNA turnover protein 4 homolog uncharacterized LOC9270809 uncharacterized LOC4349548 ribosomal protein L10 homolog mRNA turnover protein 4 mRNA turnover protein 4 homolog mRNA turnover protein 4 homolog Ribosomal protein L10 family protein ribosomal protein L10 family protein ribosomal protein L10 family protein uncharacterized LOC101262055 mRNA turnover protein 4 homolog mRNA turnover protein 4 homolog mRNA turnover protein 4 homolog uncharacterized LOC100244591 uncharacterized LOC7485154 uncharacterized LOC7490756 mRNA turnover protein 4 homolog mRNA turnover protein 4 homolog mRNA turnover protein 4 homolog mRNA turnover protein 4 homolog mRNA turnover protein 4 homolog mRNA turnover protein 4 homolog mRNA turnover protein 4 homolog uncharacterized LOC102628495 uncharacterized LOC107807980 uncharacterized LOC107773865 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 2
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 4
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 7
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 3
sly03013 Nucleocytoplasmic transport 2
sly03008 Ribosome biogenesis in eukaryotes 2
sly03010 Ribosome 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 9
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 6
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123111418 123120506 123103215 123395342 100838239 9270809 4349548 100194040 100282271 8079964 110429537 839109 100305462 100500064 101262055 103829138 103835442 103840549 100244591 7485154 7490756 11418824 107925356 107921063 106412206 106361936 106361875 102592687 102628495 107807980 107773865 5722025
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