ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
tae-r.2	123114473	ruBisCO large subunit-binding protein subunit alpha
tae-r.2	123135384	ruBisCO large subunit-binding protein subunit beta, chloroplastic
tae-r.2	123104849	ruBisCO large subunit-binding protein subunit alpha
tae-r.2	123043310	ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like
hvu-r.1	123452026	ruBisCO large subunit-binding protein subunit alpha-like
hvu-r.1	123426809	ruBisCO large subunit-binding protein subunit beta, chloroplastic-like
hvu-r.1	123424470	ruBisCO large subunit-binding protein subunit alpha, chloroplastic
bdi-r.1	100822991	ruBisCO large subunit-binding protein subunit alpha
bdi-r.1	100827537	chaperonin 60 subunit beta 4, chloroplastic
bdi-r.1	100837414	ruBisCO large subunit-binding protein subunit beta, chloroplastic
osa-u.5	107275738	chaperonin 60 subunit beta 4, chloroplastic
osa-u.5	9270136	ruBisCO large subunit-binding protein subunit alpha
osa-u.5	4339910	ruBisCO large subunit-binding protein subunit beta, chloroplastic
zma-u.5	100280498	ruBisCO large subunit-binding protein subunit beta
zma-u.5	103629384	ruBisCO large subunit-binding protein subunit beta, chloroplastic
zma-u.5	100281701	RuBisCO large subunit-binding protein subunit alpha
sbi-r.1	8061304	ruBisCO large subunit-binding protein subunit alpha, chloroplastic
sbi-r.1	8066904	ruBisCO large subunit-binding protein subunit beta, chloroplastic
sbi-r.1	8059238	ruBisCO large subunit-binding protein subunit alpha
ath-u.5	CPN60B	chaperonin 60 beta
ath-u.5	CPN60A	chaperonin-60alpha
ath-u.5	Cpn60beta2	TCP-1/cpn60 chaperonin family protein
gma-u.5	100786724	chaperonin 60 subunit alpha 2, chloroplastic
gma-u.5	100819369	ruBisCO large subunit-binding protein subunit beta, chloroplastic
gma-u.5	100806471	ruBisCO large subunit-binding protein subunit alpha
sly-u.5	101265242	ruBisCO large subunit-binding protein subunit alpha, chloroplastic
sly-u.5	101250405	chaperonin 60 subunit beta 4, chloroplastic
sly-u.5	101253117	ruBisCO large subunit-binding protein subunit beta, chloroplastic
bra-r.6	103829178	chaperonin 60 subunit beta 4, chloroplastic
bra-r.6	103864818	ruBisCO large subunit-binding protein subunit alpha, chloroplastic
bra-r.6	103829700	ruBisCO large subunit-binding protein subunit alpha, chloroplastic
vvi-u.5	100257653	chaperonin 60 subunit alpha 2, chloroplastic
vvi-u.5	100263832	ruBisCO large subunit-binding protein subunit beta, chloroplastic
vvi-u.5	100261815	ruBisCO large subunit-binding protein subunit beta, chloroplastic
ppo-u.5	7491161	ruBisCO large subunit-binding protein subunit alpha
ppo-u.5	18105953	chaperonin 60 subunit alpha 2, chloroplastic
ppo-u.5	7461344	chaperonin 60 subunit beta 2, chloroplastic
mtr-u.5	120580586	chaperonin 60 subunit beta 4, chloroplastic
mtr-u.5	25482039	ruBisCO large subunit-binding protein subunit beta, chloroplastic
mtr-u.5	25482040	ruBisCO large subunit-binding protein subunit beta, chloroplastic
ghi-r.1	107895043	chaperonin 60 subunit beta 4, chloroplastic
ghi-r.1	107896231	chaperonin 60 subunit beta 2, chloroplastic
ghi-r.1	107906140	ruBisCO large subunit-binding protein subunit beta, chloroplastic
bna-r.1	106425605	chaperonin 60 subunit beta 4, chloroplastic
bna-r.1	106423897	RuBisCO large subunit-binding protein subunit alpha, chloroplastic-like
bna-r.1	106416008	chaperonin 60 subunit beta 4, chloroplastic-like
sot-r.1	102577525	chaperonin-60 beta subunit
sot-r.1	102587813	ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like
sot-r.1	102577751	ruBisCO large subunit-binding protein subunit beta, chloroplastic
cit-r.1	102609990	ruBisCO large subunit-binding protein subunit beta, chloroplastic
cit-r.1	102611539	chaperonin 60 subunit alpha 2, chloroplastic
cit-r.1	102614876	ruBisCO large subunit-binding protein subunit alpha
nta-r.1	107797700	chaperonin 60 subunit beta 2, chloroplastic
nta-r.1	107810219	chaperonin 60 subunit beta 2, chloroplastic
nta-r.1	107819392	ruBisCO large subunit-binding protein subunit beta, chloroplastic
cre-r.1	CHLRE_04g231222v5	uncharacterized protein
cre-r.1	CHLRE_17g741450v5	uncharacterized protein
cre-r.1	CHLRE_07g339150v5	uncharacterized protein

Top 50 coexpressed genes to 123114473 (tae-r.2 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 123114473 (tae-r.2 coexpression data)

CoexMap"123114473"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0042026 [list] [network] protein refolding

(70 genes)

IEA

GO CC

GO MF

GO:0140662 [list] [network] ATP-dependent protein folding chaperone	(225 genes)	IEA
GO:0005524 [list] [network] ATP binding	(7858 genes)	IEA

Protein

XP_044391898.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, chlo_mito 5, mito 2

(predict for XP_044391898.1)

Subcellular
localization
TargetP

chlo 9, mito 4

(predict for XP_044391898.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 123114473	tae-r.2 for 123135384	tae-r.2 for 123104849	tae-r.2 for 123043310	hvu-r.1 for 123452026	hvu-r.1 for 123426809	hvu-r.1 for 123424470	bdi-r.1 for 100822991	bdi-r.1 for 100827537	bdi-r.1 for 100837414	osa-u.5 for 107275738	osa-u.5 for 9270136	osa-u.5 for 4339910	zma-u.5 for 100280498	zma-u.5 for 103629384	zma-u.5 for 100281701	sbi-r.1 for 8061304	sbi-r.1 for 8066904	sbi-r.1 for 8059238	ath-u.5 for CPN60B	ath-u.5 for CPN60A	ath-u.5 for Cpn60beta2	gma-u.5 for 100786724	gma-u.5 for 100819369	gma-u.5 for 100806471	sly-u.5 for 101265242	sly-u.5 for 101250405	sly-u.5 for 101253117	bra-r.6 for 103829178	bra-r.6 for 103864818	bra-r.6 for 103829700	vvi-u.5 for 100257653	vvi-u.5 for 100263832	vvi-u.5 for 100261815	ppo-u.5 for 7491161	ppo-u.5 for 18105953	ppo-u.5 for 7461344	mtr-u.5 for 120580586	mtr-u.5 for 25482039	mtr-u.5 for 25482040	ghi-r.1 for 107895043	ghi-r.1 for 107896231	ghi-r.1 for 107906140	bna-r.1 for 106425605	bna-r.1 for 106423897	bna-r.1 for 106416008	sot-r.1 for 102577525	sot-r.1 for 102587813	sot-r.1 for 102577751	cit-r.1 for 102609990	cit-r.1 for 102611539	cit-r.1 for 102614876	nta-r.1 for 107797700	nta-r.1 for 107810219	nta-r.1 for 107819392	cre-r.1 for CHLRE_04g231222v5	cre-r.1 for CHLRE_17g741450v5	cre-r.1 for CHLRE_07g339150v5

Ortholog

Ortholog ID: 357

Species

tae

hvu

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

CPN60B

Function^*

ruBisCO large subunit-binding protein subunit beta, chloroplastic

ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like

ruBisCO large subunit-binding protein subunit alpha-like

ruBisCO large subunit-binding protein subunit beta, chloroplastic-like

chaperonin 60 subunit beta 4, chloroplastic

ruBisCO large subunit-binding protein subunit beta, chloroplastic

ruBisCO large subunit-binding protein subunit alpha

ruBisCO large subunit-binding protein subunit beta, chloroplastic

RuBisCO large subunit-binding protein subunit alpha

uncharacterized LOC103647277

ruBisCO large subunit-binding protein subunit beta, chloroplastic

ruBisCO large subunit-binding protein subunit alpha

chaperonin 60 subunit beta 4, chloroplastic

chaperonin 60 beta

TCP-1/cpn60 chaperonin family protein

chaperonin 60 subunit alpha 2, chloroplastic

ruBisCO large subunit-binding protein subunit beta, chloroplastic

ruBisCO large subunit-binding protein subunit alpha, chloroplastic

chaperonin 60 subunit beta 4, chloroplastic

ruBisCO large subunit-binding protein subunit beta, chloroplastic

chaperonin 60 subunit beta 3, chloroplastic

ruBisCO large subunit-binding protein subunit beta, chloroplastic

chaperonin 60 subunit alpha 2, chloroplastic

ruBisCO large subunit-binding protein subunit alpha

chaperonin 60 subunit beta 4, chloroplastic

ruBisCO large subunit-binding protein subunit alpha

chaperonin 60 subunit beta 2, chloroplastic

ruBisCO large subunit-binding protein subunit alpha

ruBisCO large subunit-binding protein subunit beta, chloroplastic

ruBisCO large subunit-binding protein subunit alpha, chloroplastic

chaperonin 60 subunit beta 4, chloroplastic

chaperonin 60 subunit alpha 2, chloroplastic

ruBisCO large subunit-binding protein subunit alpha

chaperonin 60 subunit beta 4, chloroplastic

ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like

ruBisCO large subunit-binding protein subunit beta, chloroplastic

chaperonin-60 beta subunit

ruBisCO large subunit-binding protein subunit beta, chloroplastic

ruBisCO large subunit-binding protein subunit alpha

ruBisCO large subunit-binding protein subunit beta, chloroplastic

chaperonin 60 subunit alpha 2, chloroplastic

ruBisCO large subunit-binding protein subunit alpha

ruBisCO large subunit-binding protein subunit beta, chloroplastic-like

ruBisCO large subunit-binding protein subunit beta, chloroplastic

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	5
tae02010	ABC transporters	3
tae03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	7
tae03010	Ribosome	3
tae03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03018	RNA degradation	2
hvu03030	DNA replication	2
hvu03410	Base excision repair	2
hvu03420	Nucleotide excision repair	2
hvu03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03018	RNA degradation	3
hvu01230	Biosynthesis of amino acids	3
hvu00261	Monobactam biosynthesis	2
hvu00300	Lysine biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03018	RNA degradation	3
bdi00970	Aminoacyl-tRNA biosynthesis	3
bdi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04626	Plant-pathogen interaction	3
osa03018	RNA degradation	2
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	3
osa04626	Plant-pathogen interaction	3
osa03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03018	RNA degradation	4
osa04626	Plant-pathogen interaction	3
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	3
zma03040	Spliceosome	2
zma04144	Endocytosis	2
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	3
zma04626	Plant-pathogen interaction	3
zma03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	4
sbi04626	Plant-pathogen interaction	3
sbi00620	Pyruvate metabolism	2
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	4
sbi04626	Plant-pathogen interaction	4
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04712	Circadian rhythm - plant	4
sbi00730	Thiamine metabolism	2
sbi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	3
ath04141	Protein processing in endoplasmic reticulum	3
ath00970	Aminoacyl-tRNA biosynthesis	2
ath03040	Spliceosome	2
ath04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	5
ath03018	RNA degradation	3
ath03040	Spliceosome	3
ath04144	Endocytosis	3
ath04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00061	Fatty acid biosynthesis	6
sly01212	Fatty acid metabolism	6
sly00620	Pyruvate metabolism	3
sly01200	Carbon metabolism	3
sly00780	Biotin metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00970	Aminoacyl-tRNA biosynthesis	5
sly01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03018	RNA degradation	3
bra00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04626	Plant-pathogen interaction	3
bra04141	Protein processing in endoplasmic reticulum	2
bra03008	Ribosome biogenesis in eukaryotes	2
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03018	RNA degradation	4
bra03040	Spliceosome	2
bra04141	Protein processing in endoplasmic reticulum	2
bra04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03018	RNA degradation	5
vvi04141	Protein processing in endoplasmic reticulum	5
vvi04626	Plant-pathogen interaction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03018	RNA degradation	4
ppo04141	Protein processing in endoplasmic reticulum	3
ppo00620	Pyruvate metabolism	3
ppo01200	Carbon metabolism	2
ppo01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03018	RNA degradation	4
ppo04141	Protein processing in endoplasmic reticulum	3
ppo03040	Spliceosome	2
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03018	RNA degradation	4
ppo04141	Protein processing in endoplasmic reticulum	3
ppo03040	Spliceosome	2
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	2
ghi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	4
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	8
ghi04141	Protein processing in endoplasmic reticulum	2
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	9
bna03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	6
bna00230	Purine metabolism	3
bna00240	Pyrimidine metabolism	3
bna01232	Nucleotide metabolism	3
bna01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	6
bna00500	Starch and sucrose metabolism	2
bna00520	Amino sugar and nucleotide sugar metabolism	2
bna01250	Biosynthesis of nucleotide sugars	2
bna00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	3
sot04141	Protein processing in endoplasmic reticulum	2
sot01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	3
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	3
sot00020	Citrate cycle (TCA cycle)	2
sot00270	Cysteine and methionine metabolism	2
sot00566	Sulfoquinovose metabolism	2
sot00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03018	RNA degradation	3
cit03020	RNA polymerase	2
cit03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	4
cit00860	Porphyrin metabolism	2
cit01240	Biosynthesis of cofactors	2
cit03018	RNA degradation	2
cit04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00400	Phenylalanine, tyrosine and tryptophan biosynthesis	5
nta01230	Biosynthesis of amino acids	5
nta00071	Fatty acid degradation	2
nta00592	alpha-Linolenic acid metabolism	2
nta01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	6
nta04141	Protein processing in endoplasmic reticulum	5
nta00710	Carbon fixation by Calvin cycle	4
nta01200	Carbon metabolism	4
nta03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	2
nta00500	Starch and sucrose metabolism	2
nta00730	Thiamine metabolism	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03018	RNA degradation	3

Expression

Expression pattern

Entrez Gene ID^*

123142923

543499

123452026

123403144

100827537

100837414

100842360

9270136

4339910

4327993

103629384

100281701

103647277

8066904

8059238

8054346

841996

820549

832000

100786724

100795157

100785937

101265242

101250405

101259035

103832584

103856922

103829780

100257653

100253324

100251252

7491161

7483228

18098223

25482039

25482040

25492419

107895043

107945220

107958560

106425605

106400776

125577231

102577525

102577751

102594819

102609990

102611539

102614876

107821154

107830331

107783939

5729243

5726659

5717970

The preparation time of this page was 0.4 [sec].


Species	tae	hvu	bdi	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123114473 (tae-r.2 coexpression data)

Top 50 enrichment test to 123114473 (tae-r.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**